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Protein

ELAV-like protein 3

Gene

Elavl3

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at protein leveli

Functioni

Binds to AU-rich sequences (AREs) of target mRNAs, including VEGF mRNA. May also bind poly-A tracts via RRM 3. May be involved in neuronal differentiation and maintenance.2 Publications

GO - Molecular functioni

  1. AU-rich element binding Source: UniProtKB
  2. nucleotide binding Source: InterPro

GO - Biological processi

  1. cell differentiation Source: UniProtKB-KW
  2. nervous system development Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Developmental protein

Keywords - Biological processi

Differentiation, Neurogenesis

Keywords - Ligandi

RNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ELAV-like protein 3
Alternative name(s):
Hu-antigen C
Short name:
HuC
Gene namesi
Name:Elavl3
Synonyms:Huc
OrganismiMus musculus (Mouse)
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589: Chromosome 9

Organism-specific databases

MGIiMGI:109157. Elavl3.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 367367ELAV-like protein 3PRO_0000081582Add
BLAST

Proteomic databases

MaxQBiQ60900.
PaxDbiQ60900.
PRIDEiQ60900.

PTM databases

PhosphoSiteiQ60900.

Expressioni

Tissue specificityi

Brain specific.1 Publication

Gene expression databases

BgeeiQ60900.
GenevestigatoriQ60900.

Interactioni

Protein-protein interaction databases

BioGridi200485. 1 interaction.
IntActiQ60900. 1 interaction.
MINTiMINT-4094236.
STRINGi10090.ENSMUSP00000003501.

Structurei

Secondary structure

1
367
Legend: HelixTurnBeta strand
Show more details
Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Beta strandi41 – 444Combined sources
Helixi52 – 609Combined sources
Beta strandi61 – 633Combined sources
Beta strandi66 – 705Combined sources
Beta strandi74 – 763Combined sources
Beta strandi81 – 866Combined sources
Helixi90 – 10011Combined sources
Beta strandi101 – 1044Combined sources
Beta strandi109 – 1135Combined sources
Beta strandi128 – 1314Combined sources
Helixi138 – 1469Combined sources
Beta strandi151 – 1577Combined sources
Beta strandi160 – 1634Combined sources
Beta strandi168 – 1758Combined sources
Helixi176 – 18611Combined sources
Turni192 – 1954Combined sources
Beta strandi199 – 2013Combined sources

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1D8ZNMR-A36-123[»]
1D9ANMR-A124-208[»]
1FNXNMR-H36-208[»]
ProteinModelPortaliQ60900.
SMRiQ60900. Positions 36-363.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ60900.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini39 – 11779RRM 1PROSITE-ProRule annotationAdd
BLAST
Domaini125 – 20581RRM 2PROSITE-ProRule annotationAdd
BLAST
Domaini284 – 36279RRM 3PROSITE-ProRule annotationAdd
BLAST

Domaini

RRM 1 and RRM 2 bind cooperatively to AU-rich sequences in target mRNAs. RRM 3 binds to poly-A mRNA sequences.2 Publications

Sequence similaritiesi

Belongs to the RRM elav family.Curated
Contains 3 RRM (RNA recognition motif) domains.PROSITE-ProRule annotation

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiCOG0724.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000231162.
HOVERGENiHBG002295.
InParanoidiQ60900.
KOiK13208.
OMAiRYTGPLH.
OrthoDBiEOG77T14R.
PhylomeDBiQ60900.
TreeFamiTF313377.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
PRINTSiPR00961. HUDSXLRNA.
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform HuC-L (identifier: Q60900-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MVTQILGAME SQVGGGPAGP ALPNGPLLGT NGATDDSKTN LIVNYLPQNM
60 70 80 90 100
TQDEFKSLFG SIGDIESCKL VRDKITGQSL GYGFVNYSDP NDADKAINTL
110 120 130 140 150
NGLKLQTKTI KVSYARPSSA SIRDANLYVS GLPKTMSQKE MEQLFSQYGR
160 170 180 190 200
IITSRILLDQ ATGVSRGVGF IRFDKRIEAE EAIKGLNGQK PLGAAEPITV
210 220 230 240 250
KFANNPSQKT GQALLTHLYQ SSARRYAGPL HHQTQRFRLD NLLNMAYGVK
260 270 280 290 300
SPLSLIARFS PIAIDGMSGL AGVGLSGGAA GAGWCIFVYN LSPEADESVL
310 320 330 340 350
WQLFGPFGAV TNVKVIRDFT TNKCKGFGFV TMTNYDEAAM AIASLNGYRL
360
GERVLQVSFK TSKQHKA
Length:367
Mass (Da):39,533
Last modified:November 1, 1996 - v1
Checksum:iECD1A266512ADF58
GO
Isoform HuC-S (identifier: Q60900-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     251-257: Missing.

Show »
Length:360
Mass (Da):38,851
Checksum:i83C56C84B04FB345
GO

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei251 – 2577Missing in isoform HuC-S. 1 PublicationVSP_005790

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29148 mRNA. Translation: AAC52999.1.
U29149 mRNA. Translation: AAC53000.1.
BC052097 mRNA. Translation: AAH52097.1.
CCDSiCCDS52741.1. [Q60900-1]
RefSeqiNP_034617.1. NM_010487.2. [Q60900-1]
XP_006510085.1. XM_006510022.1. [Q60900-2]
UniGeneiMm.390167.

Genome annotation databases

EnsembliENSMUST00000003501; ENSMUSP00000003501; ENSMUSG00000003410. [Q60900-1]
GeneIDi15571.
KEGGimmu:15571.
UCSCiuc009onl.2. mouse. [Q60900-1]
uc009onn.1. mouse. [Q60900-2]

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
U29148 mRNA. Translation: AAC52999.1.
U29149 mRNA. Translation: AAC53000.1.
BC052097 mRNA. Translation: AAH52097.1.
CCDSiCCDS52741.1. [Q60900-1]
RefSeqiNP_034617.1. NM_010487.2. [Q60900-1]
XP_006510085.1. XM_006510022.1. [Q60900-2]
UniGeneiMm.390167.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
1D8ZNMR-A36-123[»]
1D9ANMR-A124-208[»]
1FNXNMR-H36-208[»]
ProteinModelPortaliQ60900.
SMRiQ60900. Positions 36-363.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi200485. 1 interaction.
IntActiQ60900. 1 interaction.
MINTiMINT-4094236.
STRINGi10090.ENSMUSP00000003501.

PTM databases

PhosphoSiteiQ60900.

Proteomic databases

MaxQBiQ60900.
PaxDbiQ60900.
PRIDEiQ60900.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000003501; ENSMUSP00000003501; ENSMUSG00000003410. [Q60900-1]
GeneIDi15571.
KEGGimmu:15571.
UCSCiuc009onl.2. mouse. [Q60900-1]
uc009onn.1. mouse. [Q60900-2]

Organism-specific databases

CTDi1995.
MGIiMGI:109157. Elavl3.

Phylogenomic databases

eggNOGiCOG0724.
GeneTreeiENSGT00760000118913.
HOGENOMiHOG000231162.
HOVERGENiHBG002295.
InParanoidiQ60900.
KOiK13208.
OMAiRYTGPLH.
OrthoDBiEOG77T14R.
PhylomeDBiQ60900.
TreeFamiTF313377.

Miscellaneous databases

ChiTaRSiElavl3. mouse.
EvolutionaryTraceiQ60900.
NextBioi288556.
PROiQ60900.
SOURCEiSearch...

Gene expression databases

BgeeiQ60900.
GenevestigatoriQ60900.

Family and domain databases

Gene3Di3.30.70.330. 3 hits.
InterProiIPR006548. ELAD_HUD_SF.
IPR002343. Hud_Sxl_RNA.
IPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 3 hits.
[Graphical view]
PRINTSiPR00961. HUDSXLRNA.
SMARTiSM00360. RRM. 3 hits.
[Graphical view]
TIGRFAMsiTIGR01661. ELAV_HUD_SF. 1 hit.
PROSITEiPS50102. RRM. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Two different RNA binding activities for the AU-rich element and the poly(A) sequence of the mouse neuronal protein mHuC."
    Abe R., Sakashita E., Yamamoto K., Sakamoto H.
    Nucleic Acids Res. 24:4895-4901(1996) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORMS HUC-L AND HUC-S), FUNCTION, DOMAIN, TISSUE SPECIFICITY.
    Tissue: Brain.
  2. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM HUC-L).
    Strain: C57BL/6.
    Tissue: Brain.
  3. "NMR studies on functional structures of the AU-rich element-binding domains of Hu antigen C."
    Inoue M., Muto Y., Sakamoto H., Yokoyama S.
    Nucleic Acids Res. 28:1743-1750(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: STRUCTURE BY NMR OF 36-208, RNA-BINDING, FUNCTION, DOMAIN.

Entry informationi

Entry nameiELAV3_MOUSE
AccessioniPrimary (citable) accession number: Q60900
Secondary accession number(s): Q60901
Entry historyi
Integrated into UniProtKB/Swiss-Prot: December 15, 1998
Last sequence update: November 1, 1996
Last modified: January 7, 2015
This is version 128 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.