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Q608W7 (Q608W7_METCA) Unreviewed, UniProtKB/TrEMBL

Last modified December 14, 2011. Version 48. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Peptide deformylase 1 HAMAP MF_00163
Short name=PDF 1 HAMAP MF_00163
EC=3.5.1.88 HAMAP MF_00163
Alternative name(s):
Polypeptide deformylase 1 HAMAP MF_00163
Gene names
Name:def-1 EMBL AAU92389.1
Synonyms:def1 HAMAP MF_00163
Ordered Locus Names:MCA1371
OrganismMethylococcus capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath) [Complete proteome] [HAMAP] EMBL AAU92389.1
Taxonomic identifier243233 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Methylococcales › Methylococcaceae › Methylococcus

Protein attributes

Sequence length191 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions By similarity. HAMAP MF_00163

Catalytic activity

Formyl-L-methionyl peptide + H2O = formate + methionyl peptide. HAMAP MF_00163 SAAS SAAS000181

Cofactor

Binds 1 Fe2+ ion By similarity. HAMAP MF_00163

Sequence similarities

Belongs to the polypeptide deformylase family. HAMAP MF_00163

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site1581 By similarity HAMAP MF_00163
Metal binding1151Iron By similarity HAMAP MF_00163
Metal binding1571Iron By similarity HAMAP MF_00163
Metal binding1611Iron By similarity HAMAP MF_00163

Sequences

Sequence LengthMass (Da)Tools
Q608W7 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: AA9242C7F3F0F6F3

FASTA19121,381
        10         20         30         40         50         60 
MDGLALRLKI VQAGEPVLRQ RARPLSPEEI RSAAVQALIG HMRETMRDAP GVGLAAPQIG 

        70         80         90        100        110        120 
QGLQLAVIED RADYHRGLSA EELAARGREP VPFHVIVNPE IVARSEETDV FHEGCLSLAG 

       130        140        150        160        170        180 
FSARVERARW VRVSCLDHRG EPQTIEASGW YARILQHEID HLHGRLYIDR MDPRSFTTQP 

       190 
NHVRYGDIET S

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AE017282 Genomic DNA. Translation: AAU92389.1.
RefSeqYP_113830.1. NC_002977.6.

3D structure databases

ProteinModelPortalQ608W7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3102451.
GenomeReviewsGene locus MCA1371 in contig AE017282_GR.
KEGGmca:MCA1371.
NMPDRfig|243233.4.peg.739.
PATRIC22606582. VBIMetCap22254_1404.
TIGRMCA1371.

Phylogenomic databases

HOGENOMHBG665227.
OMAGWYARIL.
ProtClustDBPRK00150.

Family and domain databases

HAMAPMF_00163. Pep_deformylase.
[Tree]
InterProIPR000181. Fmet_deformylase.
IPR023635. Peptide_deformylase.
[Graphical view]
Gene3DG3DSA:3.90.45.10. Fmet_deformylase. 1 hit.
KOK01462.
PANTHERPTHR10458. Fmet_deformylase. 1 hit.
PfamPF01327. Pep_deformylase. 1 hit.
[Graphical view]
PIRSFPIRSF004749. Pep_def. 1 hit.
PRINTSPR01576. PDEFORMYLASE.
SUPFAMSSF56420. Fmet_deformylase. 1 hit.
TIGRFAMsTIGR00079. Pept_deformyl. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ608W7_METCA
AccessionPrimary (citable) accession number: Q608W7
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: December 14, 2011
This is version 48 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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