Reviewed,
UniProtKB/Swiss-Prot Q60597 (ODO1_MOUSE)
Last modified
November 25, 2008.
Version 80.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
Customize display | text xml rdf/xml gff fasta |
Names and origin
| Protein names | Recommended name: 2-oxoglutarate dehydrogenase E1 component, mitochondrial EC=1.2.4.2 Alternative name(s): Alpha-ketoglutarate dehydrogenase | ||||
| Gene names |
| ||||
| Organism | Mus musculus (Mouse) | ||||
| Taxonomic identifier | 10090 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Mus |
Protein attributes
| Sequence length | 1023 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at protein level. |
General annotation (Comments)
| Function | The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3). |
| Catalytic activity | 2-oxoglutarate + [dihydrolipoyllysine-residue succinyltransferase] lipoyllysine = [dihydrolipoyllysine-residue succinyltransferase] S-succinyldihydrolipoyllysine + CO(2). |
| Cofactor | Thiamine pyrophosphate. |
| Enzyme regulation | Catabolite repressed. |
| Subcellular location | |
| Sequence similarities | Belongs to the alpha-ketoglutarate dehydrogenase family. |
Ontologies
Keywords | |
|---|---|
| Biological process | Glycolysis |
| Cellular component | Mitochondrion |
| Coding sequence diversity | Alternative splicing |
| Domain | Transit peptide |
| Ligand | Thiamine pyrophosphate |
| Molecular function | Oxidoreductase |
| PTM | Ubl conjugation |
| Technical term | Direct protein sequencing |
Gene Ontology (GO) | |
| Biological process | glycolysis Inferred from electronic annotation. Source: InterPro oxidation reductionInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | mitochondrial matrix Inferred from electronic annotation. Source: UniProtKB-SubCell mitochondrial membraneInferred from sequence or structural similarity. Source: UniProtKB |
| Molecular function | oxoglutarate dehydrogenase (NAD+) activity Inferred from direct assay. Source: MGI oxoglutarate dehydrogenase (succinyl-transferring) activityInferred from sequence or structural similarity. Source: UniProtKB thiamin pyrophosphate bindingInferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Alternative products
| This entry describes 4 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q60597-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Notes: No experimental confirmation available. | ||||||
| Isoform 2 (identifier: Q60597-2) The sequence of this isoform differs from the canonical sequence as follows: 139-172: IRGHHVAQLDPLGILDADLDSSVPADIISSTDKL → VRGHHIAKSCVNFDDAPVTVSSNV | ||||||
| Isoform 3 (identifier: Q60597-3) The sequence of this isoform differs from the canonical sequence as follows: 172-172: L → LDLAVFKERLRMLTVG | ||||||
| Notes: No experimental confirmation available. | ||||||
| Isoform 4 (identifier: Q60597-4) The sequence of this isoform differs from the canonical sequence as follows: 139-172: IRGHHVAQLDPLGILDADLDSSVPADIISSTDKL → VRGHHIAKLD...KERLRMLTVG |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Transit peptide | 1 – 40 | 40 | Mitochondrion By similarity | ||||||
| Chain | 41 – 1023 | 983 | 2-oxoglutarate dehydrogenase E1 component, mitochondrial | PRO_0000020434 | |||||
Regions | |||||||||
| Region | 933 – 939 | 7 | Recognized by alloreactive CD8 cytotoxic T-lymphocytes in association with a class I MHC protein | ||||||
Amino acid modifications | |||||||||
| Cross-link | 534 | Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) By similarity | |||||||
Natural variations | |||||||||
| Alternative sequence | 139 – 172 | 34 | IRGHH…STDKL → VRGHHIAKSCVNFDDAPVTV SSNV in isoform 2. | VSP_024799 | |||||
| Alternative sequence | 139 – 172 | 34 | IRGHH…STDKL → VRGHHIAKLDPLGISCVNFD DAPVTVSSNVDLAVFKERLR MLTVG in isoform 4. | VSP_024800 | |||||
| Alternative sequence | 172 | 1 | L → LDLAVFKERLRMLTVG in isoform 3. | VSP_024801 | |||||
Experimental info | |||||||||
| Sequence conflict | 416 | 1 | G → V in AAH49104. Ref.4 | ||||||
| Sequence conflict | 549 | 1 | V → F in AAH49104. Ref.4 | ||||||
| Sequence conflict | 552 | 1 | Q → E in AAH57354. Ref.4 | ||||||
| Sequence conflict | 576 | 1 | E → K in BAE29234. Ref.1 | ||||||
Sequences
| ||||||||||||||||||||||||||||||||||||
References
| « Hide 'large scale' references | |
| [1] | "The transcriptional landscape of the mammalian genome." Carninci P., Kasukawa T., Katayama S., Gough J., Frith M.C., Maeda N., Oyama R., Ravasi T., Lenhard B., Wells C., Kodzius R., Shimokawa K., Bajic V.B., Brenner S.E., Batalov S., Forrest A.R., Zavolan M., Davis M.J. Hayashizaki Y.Science 309:1559-1563(2005) [PubMed: 16141072] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1). Strain: C57BL/6J. Tissue: Bone marrow. |
| [2] | "Prediction of the coding sequences of mouse homologues of KIAA gene. The complete nucleotide sequences of mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries." Okazaki N., Kikuno R.F., Ohara R., Inamoto S., Nagase T., Ohara O., Koga H. Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 3). Tissue: Brain. |
| [3] | The mouse genome sequencing consortium Submitted (JAN-2007) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: C57BL/6J. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1; 2 AND 4). Strain: C57BL/6 and FVB/N. Tissue: Brain, Colon, Mammary tumor and Salivary gland. |
| [5] | Lubec G., Klug S. Submitted (MAR-2007) to UniProtKB Cited for: PROTEIN SEQUENCE OF 123-135 AND 185-204, MASS SPECTROMETRY. Tissue: Hippocampus. |
| [6] | Lubec G., Kang S.U. Submitted (APR-2007) to UniProtKB Cited for: PROTEIN SEQUENCE OF 123-135; 311-319; 561-568; 616-633 AND 916-925, MASS SPECTROMETRY. Strain: C57BL/6. Tissue: Brain. |
| [7] | "A ubiquitous protein is the source of naturally occurring peptides that are recognized by a CD8+ T-cell clone." Udaka K., Tsomides T.J., Walden P., Fukusen N., Eisen H.N. Proc. Natl. Acad. Sci. U.S.A. 90:11272-11276(1993) [PubMed: 8248240] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [MRNA] OF 829-958 (ISOFORMS 1/2/3/4). Strain: BALB/c. |
| [8] | "A naturally occurring peptide recognized by alloreactive CD8+ cytotoxic T lymphocytes in association with a class I MHC protein." Udaka K., Tsomides T.J., Eisen H.N. Cell 69:989-998(1992) [PubMed: 1606619] [Abstract] Cited for: PROTEIN SEQUENCE OF 933-939. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| AK147289 mRNA. Translation: BAE27824.1. AK150009 mRNA. Translation: BAE29234.1. AK169286 mRNA. Translation: BAE41044.1. AK220536 mRNA. Translation: BAD90530.1. Different initiation. AL607152 Genomic DNA. Translation: CAI24404.1. AL607152 Genomic DNA. Translation: CAI24405.1. AL607152 Genomic DNA. Translation: CAI24406.1. BC025040 mRNA. Translation: AAH25040.1. BC013670 mRNA. Translation: AAH13670.1. BC029143 mRNA. Translation: AAH29143.1. BC031165 mRNA. Translation: AAH31165.1. Different initiation. BC049104 mRNA. Translation: AAH49104.1. BC057354 mRNA. Translation: AAH57354.1. U02971 mRNA. Translation: AAC52130.1. | |
| PIR | A41911. I48884. |
| RefSeq | NP_035086.2. |
| UniGene | Mm.276348 Mm.456265 Mm.463333 |
3D structure databases | |
| ModBase | Search... |
PTM databases | |
| PhosphoSite | Q60597. |
2-D gel databases | |
| REPRODUCTION-2DPAGE | Q60597. |
Genome annotation databases | |
| Ensembl | ENSMUSG00000020456. Mus musculus. [Contig view] |
| GeneID | 18293. |
| KEGG | mmu:18293. |
| NMPDR | fig|10090.3.peg.23245. |
Organism-specific databases | |
| MGI | MGI:1098267. Ogdh. |
| Rouge | Search... |
Phylogenomic databases | |
| HOVERGEN | Q60597. |
Gene expression databases | |
| ArrayExpress | Q60597. |
| CleanEx | MM_OGDH. |
| GermOnline | ENSMUSG00000020456. Mus musculus. |
Family and domain databases | |
| InterPro | IPR011603. 2oxoglutarate_DHase_E1. IPR001017. DHase_E1. IPR005475. Transketo_Cen_R. [Graphical view] |
| PANTHER | PTHR23152. 2oxoglutarate_DH_E1. 1 hit. |
| Pfam | PF00676. E1_dh. 1 hit. PF02779. Transket_pyr. 1 hit. [Graphical view] |
| PIRSF | PIRSF000157. Oxoglu_dh_E1. 1 hit. |
| TIGRFAMs | TIGR00239. 2oxo_dh_E1. 1 hit. |
| ProtoNet | Search... |
Other Resources | |
| NextBio | 293740. |
| SOURCE | Search... |
Entry information
| Entry name | ODO1_MOUSE | ||||||||
| Accession | Primary (citable) accession number: Q60597 Secondary accession number(s): Q3UDM7 Q91WP2 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | HPI (Human Proteome Initiative) | ||||||||
Relevant documents
| MGD cross-references Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot |
| SIMILARITY comments Index of protein domains and families |

Clusters with


