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Protein
Submitted name:

Chinese hamster provirus

Gene
N/A
Organism
Cricetulus sp.
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Chinese hamster provirusImported
OrganismiCricetulus sp.Imported
Taxonomic identifieri10031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaCricetidaeCricetinaeCricetulus

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei23 – 4018HelicalSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Structurei

3D structure databases

ProteinModelPortaliQ60505.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini462 – 47615CCHC-typeInterPro annotationAdd
BLAST

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

HOVERGENiHBG060203.

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q60505-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MLHSDTFFFD FAFNLPPLWD GKALILVFIL ILFTLVLYYA HRGWCSSSRP
60 70 80 90 100
SLPQVASSIM GSSKQRDLIK NCLEIEACCP MVAESQKMLK EVQDNISETE
110 120 130 140 150
RDERIGAQKR KDMSKEKGPP QDIKKGGEKI GNNRSHPGKF KRNKDSKPSL
160 170 180 190 200
CPTTKLEALE LSSSDSEILD SSKEAELEEE LPKIKANMRP PPVNPAGVLP
210 220 230 240 250
SAPPLFGIDS FLPLEERRKL QMAFPVFENE GARVHAPVDY NQIKELAESV
260 270 280 290 300
RKYGVNANFT TIQVERLANY AMTPTDWETT VKAVLPNMGQ YMEWKALFYD
310 320 330 340 350
AAQAQAKANV TAENENQRQW TFEMLTGQGP HALNQTNYIW GVYAQISAAA
360 370 380 390 400
IKAWKALTKR DESGGHLTKI VQGPQEPFSD FVARMTEAAS RIFGDAEQAM
410 420 430 440 450
PLIEQLVFEQ ATQECRAAIA PRKSKGLQDW LKICRELGGP LTNAGLAAAI
460 470 480 490 500
LQTQRRRNTS ACFNCGKTRH LKKDCRVPER IREVELCRRC GKGYHRASEC
510 520 530 540 550
KSVRDIKGRL LPPREEPKAS QPKNGPRGPW SQGPQKYGNQ FWKSNSEKEG
560
TPEDTPEWTC VPPPTSY
Length:567
Mass (Da):63,703
Last modified:November 1, 1996 - v1
Checksum:iA3799364DA780A98
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M73970 Genomic DNA. Translation: AAA37012.1.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M73970 Genomic DNA. Translation: AAA37012.1.

3D structure databases

ProteinModelPortaliQ60505.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Phylogenomic databases

HOVERGENiHBG060203.

Family and domain databases

Gene3Di1.10.1200.30. 1 hit.
1.10.375.10. 1 hit.
4.10.60.10. 1 hit.
InterProiIPR000721. Gag_p24.
IPR008916. Retrov_capsid_C.
IPR008919. Retrov_capsid_N.
IPR001878. Znf_CCHC.
[Graphical view]
PfamiPF00607. Gag_p24. 1 hit.
PF00098. zf-CCHC. 1 hit.
[Graphical view]
SMARTiSM00343. ZnF_C2HC. 2 hits.
[Graphical view]
SUPFAMiSSF47353. SSF47353. 1 hit.
SSF47943. SSF47943. 1 hit.
SSF57756. SSF57756. 1 hit.
PROSITEiPS50158. ZF_CCHC. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiQ60505_9RODE
AccessioniPrimary (citable) accession number: Q60505
Entry historyi
Integrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 7, 2016
This is version 68 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.