Q60381 (Y059_METJA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
Uncharacterized nitrogen regulatory PII-like protein MJ0059

Gene names

Ordered Locus Names:

MJ0059

Organism

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (Methanococcus jannaschii)

Taxonomic identifier

243232 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanococci › Methanococcales › Methanocaldococcaceae › Methanocaldococcus

Protein attributes

Sequence length	112 AA.
Sequence status	Complete.
Protein existence	Evidence at protein level

General annotation (Comments)

Sequence similarities

Belongs to the P(II) protein family.

Ontologies

Keywords
Biological process	Transcription Transcription regulation
Ligand	Nucleotide-binding
Technical term	3D-structure Complete proteome Reference proteome
Gene Ontology (GO)
Biological process	regulation of nitrogen utilization Inferred from electronic annotation. Source: InterPro regulation of transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW transcription, DNA-dependent Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	enzyme regulator activity Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 112

112

Uncharacterized nitrogen regulatory PII-like protein MJ0059

PRO_0000139815

Amino acid modifications

Modified residue

51

1

O-UMP-tyrosine By similarity

Secondary structure

1

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112

Helix Strand Turn

Details...

Beta strand

1 – 8

8

Helix

10 – 12

3

Helix

13 – 22

10

Beta strand

28 – 36

9

Beta strand

39 – 42

4

Beta strand

52 – 54

3

Beta strand

56 – 66

11

Helix

67 – 69

3

Helix

70 – 81

12

Beta strand

89 – 96

8

Beta strand

98 – 101

4

Turn

102 – 104

3

Sequences

	Sequence		Length	Mass (Da)
	Q60381 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 3DC3F307C32FE9F3	FASTA	112	12,490
	10 20 30 40 50 60 MKKVEAIIRP EKLEIVKKAL SDAGYVGMTV SEVKGRGVQG GIVERYRGRE YIVDLIPKVK 70 80 90 100 110 IELVVKEEDV DNVIDIICEN ARTGNPGDGK IFVIPVERVV RVRTKEEGKE AL

References

[1]

"Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii." Bult C.J., White O., Olsen G.J., Zhou L., Fleischmann R.D., Sutton G.G., Blake J.A., FitzGerald L.M., Clayton R.A., Gocayne J.D., Kerlavage A.R., Dougherty B.A., Tomb J.-F., Adams M.D., Reich C.I., Overbeek R., Kirkness E.F., Weinstock K.G. , Merrick J.M., Glodek A., Scott J.L., Geoghagen N.S.M., Weidman J.F., Fuhrmann J.L., Nguyen D., Utterback T.R., Kelley J.M., Peterson J.D., Sadow P.W., Hanna M.C., Cotton M.D., Roberts K.M., Hurst M.A., Kaine B.P., Borodovsky M., Klenk H.-P., Fraser C.M., Smith H.O., Woese C.R., Venter J.C. Science 273:1058-1073(1996) [PubMed: 8688087] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

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Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ

L77117 Genomic DNA. Translation: AAB98041.1.

PIR

C64307.

RefSeq

NP_247023.1. NC_000909.1.

3D structure databases

PDBe
RCSB PDB
PDBj

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
2J9C	X-ray	1.30	A/B/C	1-112	[»]
2J9D	X-ray	2.10	A/B/C/D/E/F/G/H/I/J/K/L	1-112	[»]
2J9E	X-ray	1.62	A/B/C	1-112	[»]

ProteinModelPortal

Q60381.

SMR

Q60381. Positions 1-112.

ModBase

Search...

Protein-protein interaction databases

MINT

MINT-4297928.

Protocols and materials databases

StructuralBiologyKnowledgebase

Search...

Genome annotation databases

GeneID

1450898.

GenomeReviews

Gene locus MJ0059 in contig L77117_GR.

KEGG

mja:MJ_0059.

NMPDR

fig|243232.1.peg.60.

TIGR

MJ0059.

Phylogenomic databases

HOGENOM

HBG748089.

OMA

GMTISQV.

ProtClustDB

CLSK2460145.

Enzyme and pathway databases

BioCyc

MJAN243232:MJ_0059-MONOMER.

Family and domain databases

InterPro

IPR002187. N-reg_PII.
IPR011322. N-reg_PII-like_a/b.
IPR015867. N-reg_PII/ATP_PRibTrfase_C.
IPR017918. N-reg_PII_CS.
[Graphical view]

Gene3D

G3DSA:3.30.70.120. PII_glnB. 1 hit.

KO

K04751.

Pfam

PF00543. P-II. 1 hit.
[Graphical view]

PRINTS

PR00340. PIIGLNB.

SMART

SM00938. P-II. 1 hit.
[Graphical view]

SUPFAM

SSF54913. N-reg_PII-like_a/b. 1 hit.

PROSITE

PS00638. PII_GLNB_CTER. 1 hit.
PS51343. PII_GLNB_DOM. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Y059_METJA

Accession

Primary (citable) accession number: Q60381

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	November 16, 2011
This is version 65 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program