Reviewed, UniProtKB/Swiss-Prot Q60351 (Y039_METJA)

Names and origin

Protein names

Recommended name:
    Uncharacterized protein MJ0039

Gene names

Ordered Locus Names:

MJ0039

Organism

Methanocaldococcus jannaschii (Methanococcus jannaschii) [Complete proteome] [HAMAP]

Taxonomic identifier

2190 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Methanococci › Methanococcales › Methanocaldococcaceae › Methanocaldococcus

Protein attributes

Sequence length	115 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at protein level.

Ontologies

Keywords
Technical term	3D-structure Complete proteome
Gene Ontology (GO)
Biological process	transcription Inferred from electronic annotation. Source: InterPro
Molecular function	DNA-directed RNA polymerase activity Inferred from electronic annotation. Source: InterPro nucleotide binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

Feature key

Position(s)

Length

Description

Graphical view

Feature identifier

Molecule processing

Chain

1 – 115

115

Uncharacterized protein MJ0039

PRO_0000106663

Secondary structure

1

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115

Helix Strand Turn

Details...

Beta strand

11 – 20

10

Helix

22 – 35

14

Helix

40 – 52

13

Helix

57 – 69

13

Helix

74 – 83

10

Helix

88 – 94

7

Helix

104 – 111

8

Sequences

	Sequence		Length	Mass (Da)
	Q60351-1 [UniParc]. Last modified November 1, 1997. Version 1. Checksum: 898CE40770B73730	FASTA	115	13,389
	10 20 30 40 50 60 MYQAKRERMI GKKILGERYV TVSEAAEIMY NRAQIGELSY EQGCALDYLQ KFAKLDKEEA 70 80 90 100 110 KKLVEELISL GIDEKTAVKI ADILPEDLDD LRAIYYKREL PENAEEILEI VRKYI

References

[1]

"Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschii." Bult C.J., White O., Olsen G.J., Zhou L., Fleischmann R.D., Sutton G.G., Blake J.A., FitzGerald L.M., Clayton R.A., Gocayne J.D., Kerlavage A.R., Dougherty B.A., Tomb J.-F., Adams M.D., Reich C.I., Overbeek R., Kirkness E.F., Weinstock K.G. , Merrick J.M., Glodek A., Scott J.L., Geoghagen N.S.M., Weidman J.F., Fuhrmann J.L., Nguyen D., Utterback T.R., Kelley J.M., Peterson J.D., Sadow P.W., Hanna M.C., Cotton M.D., Roberts K.M., Hurst M.A., Kaine B.P., Borodovsky M., Klenk H.-P., Fraser C.M., Smith H.O., Woese C.R., Venter J.C. Science 273:1058-1073(1996) [PubMed: 8688087] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440.

+

Additional computationally mapped references.

Cross-references

Sequence databases

EMBLGenBankDDBJ

L77117 Genomic DNA. Translation: AAB98020.1.

PIR

G64304.

RefSeq

NP_247002.1.

3D structure databases

PDBPDBe

Entry	Method	Resolution (Å)	Chain	Positions	PDBsum
1GO3	X-ray	1.75	F/N	9-115	[»]

ModBase

Search...

Genome annotation databases

GeneID

1450877.

GenomeReviews

Gene locus MJ0039 in contig L77117_GR.

KEGG

mja:MJ0039.

NMPDR

fig|243232.1.peg.39.

TIGR

MJ0039.

Phylogenomic databases

HOGENOM

Q60351.

OMA

TEKMAVK

Family and domain databases

InterPro

IPR010997. HRDC-like.
IPR015906. HRDC-like_sub1.
IPR015907. HRDC-like_sub2.
IPR005574. RNA_pol_II_Rpb4.
[Graphical view]

Gene3D

G3DSA:1.10.150.80. HRDC-like_sub1. 1 hit.
G3DSA:1.10.287.420. HRDC-like_sub2. 1 hit.

Pfam

PF03874. RNA_pol_Rpb4. 1 hit.
[Graphical view]

ProtoNet

Search...

Entry information

Entry name

Y039_METJA

Accession

Primary (citable) accession number: Q60351

Entry history

Integrated into UniProtKB/Swiss-Prot:	November 1, 1997
Last sequence update:	November 1, 1997
Last modified:	November 24, 2009
This is version 54 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

HAMAP (High-quality Automated and Manual Annotation of microbial Proteomes)