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Protein

Leucine-rich repeat-containing protein 40

Gene

LRRC40

Organism
Gallus gallus (Chicken)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 40
Gene namesi
Name:LRRC40
ORF Names:RCJMB04_5h5
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Unplaced

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002262611 – 603Leucine-rich repeat-containing protein 40Add BLAST603

Proteomic databases

PaxDbiQ5ZLN0.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000018412.

Structurei

3D structure databases

ProteinModelPortaliQ5ZLN0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati83 – 104LRR 1Add BLAST22
Repeati106 – 127LRR 2Add BLAST22
Repeati129 – 150LRR 3Add BLAST22
Repeati152 – 173LRR 4Add BLAST22
Repeati175 – 196LRR 5Add BLAST22
Repeati198 – 219LRR 6Add BLAST22
Repeati221 – 242LRR 7Add BLAST22
Repeati244 – 265LRR 8Add BLAST22
Repeati266 – 286LRR 9Add BLAST21
Repeati290 – 311LRR 10Add BLAST22
Repeati313 – 335LRR 11Add BLAST23
Repeati336 – 357LRR 12Add BLAST22
Repeati401 – 422LRR 13Add BLAST22
Repeati427 – 449LRR 14Add BLAST23
Repeati451 – 473LRR 15Add BLAST23
Repeati474 – 495LRR 16Add BLAST22
Repeati497 – 518LRR 17Add BLAST22
Repeati520 – 541LRR 18Add BLAST22
Repeati544 – 565LRR 19Add BLAST22
Repeati567 – 588LRR 20Add BLAST22

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG0472. Eukaryota.
COG4886. LUCA.
HOGENOMiHOG000005761.
HOVERGENiHBG081930.
InParanoidiQ5ZLN0.
PhylomeDBiQ5ZLN0.

Family and domain databases

Gene3Di3.80.10.10. 5 hits.
InterProiView protein in InterPro
IPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
PfamiView protein in Pfam
PF13855. LRR_8. 4 hits.
SMARTiView protein in SMART
SM00369. LRR_TYP. 13 hits.
SUPFAMiSSF52058. SSF52058. 2 hits.
PROSITEiView protein in PROSITE
PS51450. LRR. 16 hits.

Sequencei

Sequence statusi: Complete.

Q5ZLN0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAARRARAG DPRAGFRRAA EEQSPAVPQG LIRAARKSGQ LNLAGRGLGE
60 70 80 90 100
VPQHVWRINL DTPEEAHQNL SFGAADRWWE QTDLTKLILA SNQLRCLSED
110 120 130 140 150
VRLLPALTVL DVHDNQLTSL PSALGQLENL QKLDVSHNKL KSIPEELLQL
160 170 180 190 200
SHLKGLLLQH NELSHLPDGF GQLVSLEELD LSNNHLTDIP KSFALLINLV
210 220 230 240 250
RLNLACNQLK DLPADISAMK SLRQLDCTKN YLESVPSELA SMASLEQLYL
260 270 280 290 300
RKNKLRSLPE LPSCKLLKEL HAGENQIEIL NAENLKHLNS LSVLELRDNK
310 320 330 340 350
IKSVPDEITL LQKLERLDLA NNDISRLPYT LGNLSQLKFL ALEGNPLRTI
360 370 380 390 400
RRDLLQKGTQ ELLKYLRSRI QDDKASPNEE PPVTAMTLPS ESRINMHAIT
410 420 430 440 450
TLKLLDYSEK QVAVIPDDVF SAVRSNPVTS VNFSKNQLTA IPPRIVELKD
460 470 480 490 500
SVCDVNFGFN KISSVSLELC TLHKLTHLDI RNNVLTSLPE EMEALTRLQV
510 520 530 540 550
INLSFNRFKV FPSVLYRMLA LETILLSNNQ VGSIDPLQLK KMEQLGTLDL
560 570 580 590 600
QNNDLLQVPP ELGNCETLRT LLLEGNPFRT PRAAILAKGT AAVLEYLRSR

IPT
Length:603
Mass (Da):67,476
Last modified:November 23, 2004 - v1
Checksum:i86E9B69346E1CD32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719704 mRNA. Translation: CAG31363.1.
RefSeqiNP_001026466.1. NM_001031295.1.
UniGeneiGga.17654.

Genome annotation databases

GeneIDi424713.
KEGGigga:424713.

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.

Entry informationi

Entry nameiLRC40_CHICK
AccessioniPrimary (citable) accession number: Q5ZLN0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: November 23, 2004
Last modified: April 12, 2017
This is version 76 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome