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Protein

Leucine-rich repeat-containing protein 40

Gene

LRRC40

Organism
Gallus gallus (Chicken)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Leucine-rich repeat-containing protein 40
Gene namesi
Name:LRRC40
ORF Names:RCJMB04_5h5
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Unplaced

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 603603Leucine-rich repeat-containing protein 40PRO_0000226261Add
BLAST

Proteomic databases

PaxDbiQ5ZLN0.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000018412.

Structurei

3D structure databases

ProteinModelPortaliQ5ZLN0.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati83 – 10422LRR 1Add
BLAST
Repeati106 – 12722LRR 2Add
BLAST
Repeati129 – 15022LRR 3Add
BLAST
Repeati152 – 17322LRR 4Add
BLAST
Repeati175 – 19622LRR 5Add
BLAST
Repeati198 – 21922LRR 6Add
BLAST
Repeati221 – 24222LRR 7Add
BLAST
Repeati244 – 26522LRR 8Add
BLAST
Repeati266 – 28621LRR 9Add
BLAST
Repeati290 – 31122LRR 10Add
BLAST
Repeati313 – 33523LRR 11Add
BLAST
Repeati336 – 35722LRR 12Add
BLAST
Repeati401 – 42222LRR 13Add
BLAST
Repeati427 – 44923LRR 14Add
BLAST
Repeati451 – 47323LRR 15Add
BLAST
Repeati474 – 49522LRR 16Add
BLAST
Repeati497 – 51822LRR 17Add
BLAST
Repeati520 – 54122LRR 18Add
BLAST
Repeati544 – 56522LRR 19Add
BLAST
Repeati567 – 58822LRR 20Add
BLAST

Sequence similaritiesi

Contains 20 LRR (leucine-rich) repeats.Curated

Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

eggNOGiKOG0472. Eukaryota.
COG4886. LUCA.
HOGENOMiHOG000005761.
HOVERGENiHBG081930.
InParanoidiQ5ZLN0.
PhylomeDBiQ5ZLN0.

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 4 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 13 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 2 hits.
PROSITEiPS51450. LRR. 16 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5ZLN0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAAARRARAG DPRAGFRRAA EEQSPAVPQG LIRAARKSGQ LNLAGRGLGE
60 70 80 90 100
VPQHVWRINL DTPEEAHQNL SFGAADRWWE QTDLTKLILA SNQLRCLSED
110 120 130 140 150
VRLLPALTVL DVHDNQLTSL PSALGQLENL QKLDVSHNKL KSIPEELLQL
160 170 180 190 200
SHLKGLLLQH NELSHLPDGF GQLVSLEELD LSNNHLTDIP KSFALLINLV
210 220 230 240 250
RLNLACNQLK DLPADISAMK SLRQLDCTKN YLESVPSELA SMASLEQLYL
260 270 280 290 300
RKNKLRSLPE LPSCKLLKEL HAGENQIEIL NAENLKHLNS LSVLELRDNK
310 320 330 340 350
IKSVPDEITL LQKLERLDLA NNDISRLPYT LGNLSQLKFL ALEGNPLRTI
360 370 380 390 400
RRDLLQKGTQ ELLKYLRSRI QDDKASPNEE PPVTAMTLPS ESRINMHAIT
410 420 430 440 450
TLKLLDYSEK QVAVIPDDVF SAVRSNPVTS VNFSKNQLTA IPPRIVELKD
460 470 480 490 500
SVCDVNFGFN KISSVSLELC TLHKLTHLDI RNNVLTSLPE EMEALTRLQV
510 520 530 540 550
INLSFNRFKV FPSVLYRMLA LETILLSNNQ VGSIDPLQLK KMEQLGTLDL
560 570 580 590 600
QNNDLLQVPP ELGNCETLRT LLLEGNPFRT PRAAILAKGT AAVLEYLRSR

IPT
Length:603
Mass (Da):67,476
Last modified:November 23, 2004 - v1
Checksum:i86E9B69346E1CD32
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719704 mRNA. Translation: CAG31363.1.
RefSeqiNP_001026466.1. NM_001031295.1.
UniGeneiGga.17654.

Genome annotation databases

GeneIDi424713.
KEGGigga:424713.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719704 mRNA. Translation: CAG31363.1.
RefSeqiNP_001026466.1. NM_001031295.1.
UniGeneiGga.17654.

3D structure databases

ProteinModelPortaliQ5ZLN0.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9031.ENSGALP00000018412.

Proteomic databases

PaxDbiQ5ZLN0.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi424713.
KEGGigga:424713.

Organism-specific databases

CTDi55631.

Phylogenomic databases

eggNOGiKOG0472. Eukaryota.
COG4886. LUCA.
HOGENOMiHOG000005761.
HOVERGENiHBG081930.
InParanoidiQ5ZLN0.
PhylomeDBiQ5ZLN0.

Miscellaneous databases

PROiQ5ZLN0.

Family and domain databases

Gene3Di3.80.10.10. 4 hits.
InterProiIPR032675. L_dom-like.
IPR001611. Leu-rich_rpt.
IPR003591. Leu-rich_rpt_typical-subtyp.
[Graphical view]
PfamiPF13855. LRR_8. 4 hits.
[Graphical view]
SMARTiSM00369. LRR_TYP. 13 hits.
[Graphical view]
SUPFAMiSSF52058. SSF52058. 2 hits.
PROSITEiPS51450. LRR. 16 hits.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiLRC40_CHICK
AccessioniPrimary (citable) accession number: Q5ZLN0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 7, 2006
Last sequence update: November 23, 2004
Last modified: June 8, 2016
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.