Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

WD repeat domain phosphoinositide-interacting protein 3

Gene

WDR45B

Organism
Gallus gallus (Chicken)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
WD repeat domain phosphoinositide-interacting protein 3
Short name:
WIPI-3
Alternative name(s):
WD repeat-containing protein 45B
Gene namesi
Name:WDR45B
Synonyms:WIPI3
ORF Names:RCJMB04_8d21
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiArchelosauriaArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalloanseraeGalliformesPhasianidaePhasianinaeGallus
Proteomesi
  • UP000000539 Componenti: Chromosome 18

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 344344WD repeat domain phosphoinositide-interacting protein 3PRO_0000051448Add
BLAST

Proteomic databases

PaxDbiQ5ZL16.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000002372.

Structurei

3D structure databases

ProteinModelPortaliQ5ZL16.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati183 – 22341WD 1Add
BLAST
Repeati228 – 26740WD 2Add
BLAST

Sequence similaritiesi

Belongs to the WD repeat SVP1 family.Curated
Contains 2 WD repeats.Curated

Keywords - Domaini

Repeat, WD repeat

Phylogenomic databases

eggNOGiKOG2111. Eukaryota.
ENOG410XQZ6. LUCA.
GeneTreeiENSGT00730000110940.
HOGENOMiHOG000217543.
HOVERGENiHBG053275.
InParanoidiQ5ZL16.
OMAiNPKGECS.
OrthoDBiEOG76739Z.
PhylomeDBiQ5ZL16.
TreeFamiTF314859.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
SMARTiSM00320. WD40. 2 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5ZL16-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNLLPANPHG NGLLYAGFNQ DHGCFACGME NGFRVYNADP LKEKEKQEFP
60 70 80 90 100
EGGVGHVEML FRCNYLALVG GGKKPKYPPN KVMIWDDLKK KTVIEIEFST
110 120 130 140 150
EVKAVKLRRD RIVVVLDSMI KVFTFTHNPH QLHVFETCYN PKGLCVLCPN
160 170 180 190 200
SNNSLLAFPG THTGHVQIVD LANTEKPPVD IPAHEGILSC IALNLQGTRI
210 220 230 240 250
ATASEKGTLI RIFDTSSGHL IQELRRGSQA ANIYCINFNQ DASLICVSSD
260 270 280 290 300
HGTVHIFAAE DPKRNKQSSL ASASFLPKYF SSKWSFSKFQ VPSGSPCICA
310 320 330 340
FGTEPNAVLA ICADGSYYKF LFNQKGECSR DVYAQFLEMT DDKL
Length:344
Mass (Da):38,090
Last modified:November 23, 2004 - v1
Checksum:i99278B2D8ADA556D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719918 mRNA. Translation: CAG31577.1.
RefSeqiNP_001007845.1. NM_001007844.1.
UniGeneiGga.11558.

Genome annotation databases

EnsembliENSGALT00000002374; ENSGALP00000002372; ENSGALG00000001563.
GeneIDi417339.
KEGGigga:417339.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AJ719918 mRNA. Translation: CAG31577.1.
RefSeqiNP_001007845.1. NM_001007844.1.
UniGeneiGga.11558.

3D structure databases

ProteinModelPortaliQ5ZL16.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9031.ENSGALP00000002372.

Proteomic databases

PaxDbiQ5ZL16.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSGALT00000002374; ENSGALP00000002372; ENSGALG00000001563.
GeneIDi417339.
KEGGigga:417339.

Organism-specific databases

CTDi56270.

Phylogenomic databases

eggNOGiKOG2111. Eukaryota.
ENOG410XQZ6. LUCA.
GeneTreeiENSGT00730000110940.
HOGENOMiHOG000217543.
HOVERGENiHBG053275.
InParanoidiQ5ZL16.
OMAiNPKGECS.
OrthoDBiEOG76739Z.
PhylomeDBiQ5ZL16.
TreeFamiTF314859.

Miscellaneous databases

PROiQ5ZL16.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
SMARTiSM00320. WD40. 2 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: CB.
    Tissue: Bursa of Fabricius.

Entry informationi

Entry nameiWIPI3_CHICK
AccessioniPrimary (citable) accession number: Q5ZL16
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 10, 2006
Last sequence update: November 23, 2004
Last modified: June 8, 2016
This is version 78 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.