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Q5ZIP6

- OTU6B_CHICK

UniProt

Q5ZIP6 - OTU6B_CHICK

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Protein
OTU domain-containing protein 6B
Gene
OTUD6B, RCJMB04_24h18
Organism
Gallus gallus (Chicken)
Status
Reviewed - Annotation score: 2 out of 5 - Experimental evidence at transcript leveli

Functioni

Catalytic activityi

Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei164 – 1641 By similarity
Active sitei167 – 1671Nucleophile By similarity
Active sitei286 – 2861 By similarity

GO - Molecular functioni

  1. cysteine-type peptidase activity Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

Hydrolase, Protease, Thiol protease

Keywords - Biological processi

Ubl conjugation pathway

Names & Taxonomyi

Protein namesi
Recommended name:
OTU domain-containing protein 6B (EC:3.4.19.12)
Gene namesi
Name:OTUD6B
ORF Names:RCJMB04_24h18
OrganismiGallus gallus (Chicken)
Taxonomic identifieri9031 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiTestudines + Archosauria groupArchosauriaDinosauriaSaurischiaTheropodaCoelurosauriaAvesNeognathaeGalliformesPhasianidaePhasianinaeGallus
ProteomesiUP000000539: Chromosome 2

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 302302OTU domain-containing protein 6B
PRO_0000076281Add
BLAST

Proteomic databases

PaxDbiQ5ZIP6.

Interactioni

Protein-protein interaction databases

STRINGi9031.ENSGALP00000025612.

Structurei

3D structure databases

ProteinModelPortaliQ5ZIP6.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini156 – 293138OTU
Add
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni161 – 1677Cys-loop By similarity
Regioni228 – 23811Variable-loop By similarity
Add
BLAST
Regioni276 – 28611His-loop By similarity
Add
BLAST

Sequence similaritiesi

Contains 1 OTU domain.

Phylogenomic databases

eggNOGiCOG5539.
GeneTreeiENSGT00390000012840.
HOGENOMiHOG000192906.
HOVERGENiHBG080227.
InParanoidiQ5ZIP6.
KOiK18342.
OMAiDMYTPEE.
OrthoDBiEOG7WT42W.
PhylomeDBiQ5ZIP6.
TreeFamiTF315010.

Family and domain databases

InterProiIPR003323. OTU.
[Graphical view]
PfamiPF02338. OTU. 1 hit.
[Graphical view]
PROSITEiPS50802. OTU. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5ZIP6-1 [UniParc]FASTAAdd to Basket

« Hide

MEGSEDEEAE AGGPLQQLVK RQRREKRELQ AKIQGMKNAV PKNDKKRRKQ    50
LAEEVAKLEA ELEQKHKEEL KQLKEAMPEQ NKIDSIADGV ANFELEGREQ 100
QIQHPRISKA QKRREKKAAL EKEREERIAE AEIENLTGAR HLESQKLASL 150
LAARHLEIKQ IPSDGHCMYR AIEDQLKDHH NSWTVATLRN QTAKYIHSHF 200
DDFLPFLTNP NTGDMYSKEE FEKYCDDIAN TAAWGGQLEL RALSHILQTP 250
IEVVQMDSPS IIVGEEYSGK PIILVYMRHA YGLGEHYNSV KLLTDATTEN 300
GS 302
Length:302
Mass (Da):34,542
Last modified:November 23, 2004 - v1
Checksum:iD23A118D9F4A6A13
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ720738 mRNA. Translation: CAG32397.1.
RefSeqiNP_001006347.1. NM_001006347.1.
UniGeneiGga.16131.

Genome annotation databases

EnsembliENSGALT00000025659; ENSGALP00000025612; ENSGALG00000015920.
GeneIDi420222.
KEGGigga:420222.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AJ720738 mRNA. Translation: CAG32397.1 .
RefSeqi NP_001006347.1. NM_001006347.1.
UniGenei Gga.16131.

3D structure databases

ProteinModelPortali Q5ZIP6.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 9031.ENSGALP00000025612.

Proteomic databases

PaxDbi Q5ZIP6.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSGALT00000025659 ; ENSGALP00000025612 ; ENSGALG00000015920 .
GeneIDi 420222.
KEGGi gga:420222.

Organism-specific databases

CTDi 51633.

Phylogenomic databases

eggNOGi COG5539.
GeneTreei ENSGT00390000012840.
HOGENOMi HOG000192906.
HOVERGENi HBG080227.
InParanoidi Q5ZIP6.
KOi K18342.
OMAi DMYTPEE.
OrthoDBi EOG7WT42W.
PhylomeDBi Q5ZIP6.
TreeFami TF315010.

Miscellaneous databases

NextBioi 20823170.
PROi Q5ZIP6.

Family and domain databases

InterProi IPR003323. OTU.
[Graphical view ]
Pfami PF02338. OTU. 1 hit.
[Graphical view ]
PROSITEi PS50802. OTU. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: CB.
    Tissue: Bursa of Fabricius.

Entry informationi

Entry nameiOTU6B_CHICK
AccessioniPrimary (citable) accession number: Q5ZIP6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: January 24, 2006
Last sequence update: November 23, 2004
Last modified: September 3, 2014
This is version 53 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

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