Q5ZIH1 (Q5ZIH1_CHICK) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Uncharacterized protein Ensembl ENSGALP00000018212

Gene names

Name:	HNRNPD Ensembl ENSGALP00000018212
ORF Names:	RCJMB04_26e18 EMBL CAG32472.1

Organism

Gallus gallus (Chicken) [Reference proteome]

Taxonomic identifier

9031 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Sauropsida › Sauria › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Galliformes › Phasianidae › Phasianinae › Gallus

Protein attributes

Sequence length	257 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	regulation of mRNA stability Inferred from electronic annotation. Source: Compara
Cellular_component	nucleus Inferred from electronic annotation. Source: Compara ribonucleoprotein complex Inferred from electronic annotation. Source: Compara
Molecular_function	nucleotide binding Inferred from electronic annotation. Source: InterPro telomeric DNA binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5ZIH1 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: 31F10517B564FABB	FASTA	257	29,355
	10 20 30 40 50 60 MFIGGLSWDT TKKDLKDYFS KFGEVVDCTL KLDPITGRSR GFGFVLFKES ESVDKVMDQK 70 80 90 100 110 120 EHKLNGKVID PKRAKAMKTK EPVKKIFVGG LSPDTPEEKI REYFGAFGEV ESIELPMDNK 130 140 150 160 170 180 TNKRRGFCFI TFKEEEPVKK IMEKKYHNVG LSKCEIKVAM SKEQYQQQQQ WGSRGGFVGR 190 200 210 220 230 240 ARGRGGGPSQ NWNQGYSNYW NQGYGNYGYN SQGYGGYGGY DYTGYNNYYG YSDYSNQQSG 250 YGKVSRRGGH QNSYKPY

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution." International Chicken Genome Sequencing Consortium Hillier L.W., Miller W., Birney E., Warren W., Hardison R.C., Ponting C.P., Bork P., Burt D.W., Groenen M.A.M., Delany M.E., Dodgson J.B., Chinwalla A.T., Cliften P.F., Clifton S.W., Delehaunty K.D., Fronick C., Fulton R.S., Graves T.A. , Kremitzki C., Layman D., Magrini V., McPherson J.D., Miner T.L., Minx P., Nash W.E., Nhan M.N., Nelson J.O., Oddy L.G., Pohl C.S., Randall-Maher J., Smith S.M., Wallis J.W., Yang S.-P., Romanov M.N., Rondelli C.M., Paton B., Smith J., Morrice D., Daniels L., Tempest H.G., Robertson L., Masabanda J.S., Griffin D.K., Vignal A., Fillon V., Jacobbson L., Kerje S., Andersson L., Crooijmans R.P., Aerts J., van der Poel J.J., Ellegren H., Caldwell R.B., Hubbard S.J., Grafham D.V., Kierzek A.M., McLaren S.R., Overton I.M., Arakawa H., Beattie K.J., Bezzubov Y., Boardman P.E., Bonfield J.K., Croning M.D.R., Davies R.M., Francis M.D., Humphray S.J., Scott C.E., Taylor R.G., Tickle C., Brown W.R.A., Rogers J., Buerstedde J.-M., Wilson S.A., Stubbs L., Ovcharenko I., Gordon L., Lucas S., Miller M.M., Inoko H., Shiina T., Kaufman J., Salomonsen J., Skjoedt K., Wong G.K.-S., Wang J., Liu B., Wang J., Yu J., Yang H., Nefedov M., Koriabine M., Dejong P.J., Goodstadt L., Webber C., Dickens N.J., Letunic I., Suyama M., Torrents D., von Mering C., Zdobnov E.M., Makova K., Nekrutenko A., Elnitski L., Eswara P., King D.C., Yang S., Tyekucheva S., Radakrishnan A., Harris R.S., Chiaromonte F., Taylor J., He J., Rijnkels M., Griffiths-Jones S., Ureta-Vidal A., Hoffman M.M., Severin J., Searle S.M.J., Law A.S., Speed D., Waddington D., Cheng Z., Tuzun E., Eichler E., Bao Z., Flicek P., Shteynberg D.D., Brent M.R., Bye J.M., Huckle E.J., Chatterji S., Dewey C., Pachter L., Kouranov A., Mourelatos Z., Hatzigeorgiou A.G., Paterson A.H., Ivarie R., Brandstrom M., Axelsson E., Backstrom N., Berlin S., Webster M.T., Pourquie O., Reymond A., Ucla C., Antonarakis S.E., Long M., Emerson J.J., Betran E., Dupanloup I., Kaessmann H., Hinrichs A.S., Bejerano G., Furey T.S., Harte R.A., Raney B., Siepel A., Kent W.J., Haussler D., Eyras E., Castelo R., Abril J.F., Castellano S., Camara F., Parra G., Guigo R., Bourque G., Tesler G., Pevzner P.A., Smit A., Fulton L.A., Mardis E.R., Wilson R.K. Nature 432:695-716(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Red jungle fowl Ensembl ENSGALP00000018212.
[2]	"Full-length cDNAs from chicken bursal lymphocytes to facilitate genefunction analysis." Caldwell R.B., Kierzek A.M., Arakawa H., Bezzubov Y., Zaim J., Fiedler P., Kutter S., Blagodatski A., Kostovska D., Koter M., Plachy J., Carninci P., Hayashizaki Y., Buerstedde J.M. Genome Biol. 6:R6-R6(2005) Cited for: NUCLEOTIDE SEQUENCE. Strain: CB EMBL CAG32472.1. Tissue: Bursa EMBL CAG32472.1.
[3]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Red jungle fowl Ensembl ENSGALP00000018212.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AADN02009040 Genomic DNA. No translation available. AJ720813 mRNA. Translation: CAG32472.1.
IPI	IPI00597667.
RefSeq	NP_001026314.1. NM_001031143.1.
UniGene	Gga.4605.
3D structure databases
SMR	Q5ZIH1. Positions 1-74, 83-161.
ModBase	Search...
Protein-protein interaction databases
STRING	9031.ENSGALP00000037217.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSGALT00000018234; ENSGALP00000018212; ENSGALG00000011184.
GeneID	422602.
KEGG	gga:422602.
Organism-specific databases
CTD	3184.
Phylogenomic databases
eggNOG	COG0724.
GeneTree	ENSGT00700000104347.
HOGENOM	HOG000234441.
HOVERGEN	HBG002295.
InParanoid	Q5ZIH1.
KO	K13044.
OMA	PNQNWNQ.
OrthoDB	EOG49W2FZ.
Gene expression databases
ArrayExpress	Q5ZIH1.
Family and domain databases
Gene3D	3.30.70.330. 2 hits.
InterPro	IPR012677. Nucleotide-bd_a/b_plait. IPR000504. RRM_dom. [Graphical view]
Pfam	PF00076. RRM_1. 2 hits. [Graphical view]
SMART	SM00360. RRM. 2 hits. [Graphical view]
PROSITE	PS50102. RRM. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	20825212.

Entry information

Entry name

Q5ZIH1_CHICK

Accession

Primary (citable) accession number: Q5ZIH1

Entry history

Integrated into UniProtKB/TrEMBL:	November 23, 2004
Last sequence update:	November 23, 2004
Last modified:	May 1, 2013
This is version 62 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)