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Q5ZID5 (UBP28_CHICK) Reviewed, UniProtKB/Swiss-Prot

Last modified April 3, 2013. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ubiquitin carboxyl-terminal hydrolase 28
EC=3.4.19.12
Alternative name(s):
Deubiquitinating enzyme 28
Ubiquitin thioesterase 28
Ubiquitin-specific-processing protease 28
Gene names
Name:USP28
ORF Names:RCJMB04_27l24
OrganismGallus gallus (Chicken) [Reference proteome]
Taxonomic identifier9031 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Archosauria › Dinosauria › Saurischia › Theropoda › Coelurosauria › Aves › Neognathae › Galliformes › Phasianidae › Phasianinae › Gallus

Protein attributes

Sequence length1047 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

General annotation (Comments)

Function

Deubiquitinase involved in DNA damage response checkpoint and MYC proto-oncogene stability. Involved in DNA damage induced apoptosis by specifically deubiquitinating proteins of the DNA damage pathway such as CLSPN. Also involved in G2 DNA damage checkpoint, by deubiquitinating CLSPN, and preventing its degradation by the anaphase promoting complex/cyclosome (APC/C). Specifically deubiquitinates MYC in the nucleoplasm, leading to prevent MYC degradation by the proteasome By similarity.

Catalytic activity

Thiol-dependent hydrolysis of ester, thioester, amide, peptide and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-residue protein attached to proteins as an intracellular targeting signal).

Subcellular location

Nucleus › nucleoplasm By similarity.

Sequence similarities

Belongs to the peptidase C19 family. USP28 subfamily.

Contains 1 UIM (ubiquitin-interacting motif) repeat.

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 10471047Ubiquitin carboxyl-terminal hydrolase 28
PRO_0000080659

Regions

Repeat94 – 11320UIM

Sites

Active site1651Nucleophile By similarity
Active site6011Proton acceptor By similarity

Sequences

Sequence LengthMass (Da)Tools
Q5ZID5 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: 93B40127861B2A00

FASTA1,047118,747
        10         20         30         40         50         60 
MTAELQAASG GPGGLEADCQ VLNKMKEITG IQDADFLHAA LKAAKGNLME ALIVLTEERD 

        70         80         90        100        110        120 
QEPVQNTAAA EPSSWEGSAV GKEPPQGGAA FDPEKKGDVH SAVAYGQLES PKAHAAERPQ 

       130        140        150        160        170        180 
EVHSPEHKNR SKRKRCEVWG ENSKQSDWKR VGDWPVGMKN IGNTCWFSAV IQSLFQLPQF 

       190        200        210        220        230        240 
RRLVLSYSFP PNVLESCRTR TGKRNIAFMQ ELQCLFALML GTRRKFVDPS AALELLRDAF 

       250        260        270        280        290        300 
KSTEEQQQDV SEFTHKLLDW LEDAFQLAVN VRSPGDKSEN PMVQLFYGTF LTEGVHEGNT 

       310        320        330        340        350        360 
FSKIETFGQY PLQVNGYRNL NECLEGAMVE GEMDEETATQ SVKYVQERWF TKLPPVLTFE 

       370        380        390        400        410        420 
LSRFEFNQSL GQPEKIHTKL EFPQTIFMDR YLYCSKELIQ TKREEMKKLK EKMLVLQQKL 

       430        440        450        460        470        480 
ERYMKYGSGP ARFPLPDMLQ YVLEFITTKP AGAVSSACVS STEDSQMMDR QSQGESLILG 

       490        500        510        520        530        540 
TPSQPDSMLD GKDGKPEDEA VLLANSSPQQ QLNAPLQPSE PPAEMSDCPA PHVVSEEEMN 

       550        560        570        580        590        600 
LVTTCLQRWR NEIEQDVRDL KESIARVSLS IDEMYSDPHL QQVPYHLHAV LVHEGQANAG 

       610        620        630        640        650        660 
HYWAFIYDQP RKSWLKYNDI SVTESSWEEL ERDSFGGLRN ASAYCLMYIS DKVSHVVAGE 

       670        680        690        700        710        720 
GDGSEVGQFQ KEVEALPPEL RRYIQEDNWR LEQEAEEWEE EQSCKIPSTA SESQELSPES 

       730        740        750        760        770        780 
GLDPPAAHEQ SLRSLSSEHA MIAKEQTAKA IANAANVYEK NGVEAALCEA FHEEYSRLYL 

       790        800        810        820        830        840 
LSKETPTPQN DARLQHVLVY FLQNDAPQQI VERTLLEQFA DKNLSYDERS ISIMKVARDK 

       850        860        870        880        890        900 
LKEIGPDEVN MEEYKKWHED YSLFRKVSVY LLTGLELYQN RKYKESLTYL IYAYQSNTTL 

       910        920        930        940        950        960 
LKKGANRGVN ESLITLYRRK CLLKLNEVAS SLFVSCEEAH VAEGISILNE LIIPCMHLIN 

       970        980        990       1000       1010       1020 
NFDISREDMD AIEVMRNRWC SYLGREDMDA SLQIRLGELL PRLLDGSTEV VVLKEPPKIR 

      1030       1040 
PNSPYDLCSR FAAVMESIHD ASTVTVK

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References

[1]"Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis."
Caldwell R.B., Kierzek A.M., Arakawa H., Bezzubov Y., Zaim J., Fiedler P., Kutter S., Blagodatski A., Kostovska D., Koter M., Plachy J., Carninci P., Hayashizaki Y., Buerstedde J.-M.
Genome Biol. 6:R6.1-R6.9(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: CB.
Tissue: Bursa of Fabricius.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AJ720849 mRNA. Translation: CAG32508.1.
IPIIPI00651220.
RefSeqNP_001026667.1. NM_001031496.1.
UniGeneGga.22397.

3D structure databases

ProteinModelPortalQ5ZID5.
ModBaseSearch...

Protein family/group databases

MEROPSC19.054.

Proteomic databases

PaxDbQ5ZID5.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID428246.
KEGGgga:428246.

Organism-specific databases

CTD57646.

Phylogenomic databases

eggNOGCOG5077.
HOGENOMHOG000007956.
HOVERGENHBG056030.
InParanoidQ5ZID5.
KOK11849.
OrthoDBEOG4WM4T0.

Family and domain databases

InterProIPR018200. Pept_C19ubi-hydrolase_C_CS.
IPR001394. Peptidase_C19.
IPR009060. UBA-like.
[Graphical view]
PfamPF00443. UCH. 1 hit.
[Graphical view]
SUPFAMSSF46934. UBA_like. 1 hit.
PROSITEPS00972. UCH_2_1. 1 hit.
PS00973. UCH_2_2. 1 hit.
PS50235. UCH_2_3. 1 hit.
PS50330. UIM. False negative.
[Graphical view]
ProtoNetSearch...

Other

NextBio20829288.

Entry information

Entry nameUBP28_CHICK
AccessionPrimary (citable) accession number: Q5ZID5
Entry history
Integrated into UniProtKB/Swiss-Prot: September 13, 2005
Last sequence update: November 23, 2004
Last modified: April 3, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Relevant documents

Peptidase families

Classification of peptidase families and list of entries

SIMILARITY comments

Index of protein domains and families

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