Reviewed,
UniProtKB/Swiss-Prot Q5ZCL8 (CRS2_ORYSJ)
Last modified
November 24, 2009.
Version 34.
History...
Clusters with 100%,
90%,
50% identity |
Documents (2) |
Third-party data |
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Names and origin
| Protein names | Recommended name: Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic Alternative name(s): Chloroplastic RNA splicing factor 2 CRS2-like protein | ||||
| Gene names |
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| Organism | Oryza sativa subsp. japonica (Rice) | ||||
| Taxonomic identifier | 39947 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza |
Protein attributes
| Sequence length | 259 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level. |
General annotation (Comments)
| Function | Required for the splicing of group IIB introns in chloroplasts By similarity. |
| Subunit structure | Part of large ribonucleo-protein complexes that include group IIB introns and either CAF1 or CAF2 By similarity. |
| Subcellular location | Plastid › chloroplast stroma By similarity. |
| Sequence similarities | Belongs to the PTH family. CRS2 subfamily. |
Ontologies
| Keywords | |
|---|---|
| Biological process | mRNA processing mRNA splicing |
| Cellular component | Chloroplast Plastid |
| Domain | Transit peptide |
| Molecular function | Ribonucleoprotein |
| Gene Ontology (GO) | |
| Biological process | RNA splicing Inferred from electronic annotation. Source: UniProtKB-KW mRNA processingInferred from electronic annotation. Source: UniProtKB-KW translationInferred from electronic annotation. Source: InterPro |
| Cellular component | chloroplast stroma Inferred from electronic annotation. Source: UniProtKB-SubCell ribonucleoprotein complexInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | aminoacyl-tRNA hydrolase activity Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
Sequences
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References
| « Hide 'large scale' references | |
| [1] | "The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. Gojobori T.Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare. |
| [2] | "The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare. |
| [3] | "Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare. |
| [4] | "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare. |
Cross-references
Sequence databases | |
|---|---|
| AP003214 Genomic DNA. Translation: BAD52792.1. AP008207 Genomic DNA. Translation: BAF03849.1. AK068422 mRNA. No translation available. | |
| RefSeq | NP_001041935.1. |
| UniGene | Os.35230 |
3D structure databases | |
| HSSP | HSSP built from PDB template 2PTH based on UniProtKB P0A7D1. |
| SMR | Q5ZCL8. Positions 62-252. |
| ModBase | Search... |
Genome annotation databases | |
| GeneID | 4325801. |
| KEGG | osa:4325801. |
Organism-specific databases | |
| Gramene | Q5ZCL8. |
Family and domain databases | |
| InterPro | IPR001328. Pept_tRNA_hydro. IPR018171. Pept_tRNA_hydro_CS. [Graphical view] |
| Gene3D | G3DSA:3.40.50.1470. Pept_tRNA_hydro. 1 hit. |
| PANTHER | PTHR17224. Pept_tRNA_hydro. 1 hit. |
| Pfam | PF01195. Pept_tRNA_hydro. 1 hit. [Graphical view] |
| TIGRFAMs | TIGR00447. pth. 1 hit. |
| PROSITE | PS01195. PEPT_TRNA_HYDROL_1. 1 hit. PS01196. PEPT_TRNA_HYDROL_2. False negative. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | CRS2_ORYSJ | ||||||||
| Accession | Primary (citable) accession number: Q5ZCL8 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation project | PPAP (Plant Proteome Annotation Project) | ||||||||
Relevant documents
| Oryza sativa (rice) Index of Oryza sativa entries and their corresponding gene designations |
| SIMILARITY comments Index of protein domains and families |

Clusters with


