Q5ZCL8 (CRS2_ORYSJ) Reviewed, UniProtKB/Swiss-Prot
Last modified
November 16, 2011.
Version 46.
History...
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic Alternative name(s): CRS2-like protein Chloroplastic RNA splicing factor 2 | ||||
| Gene names |
| ||||
| Organism | Oryza sativa subsp. japonica (Rice) | ||||
| Taxonomic identifier | 39947 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza |
Protein attributes
| Sequence length | 259 AA. |
| Sequence status | Complete. |
| Sequence processing | The displayed sequence is further processed into a mature form. |
| Protein existence | Evidence at transcript level |
General annotation (Comments)
| Function | Required for the splicing of group IIB introns in chloroplasts By similarity. |
| Subunit structure | Part of large ribonucleo-protein complexes that include group IIB introns and either CAF1 or CAF2 By similarity. |
| Subcellular location | Plastid › chloroplast stroma By similarity. |
| Sequence similarities | Belongs to the PTH family. CRS2 subfamily. |
Ontologies
| Keywords | |
|---|---|
| Biological process | mRNA processing mRNA splicing |
| Cellular component | Chloroplast Plastid |
| Domain | Transit peptide |
| Molecular function | Ribonucleoprotein |
| Gene Ontology (GO) | |
| Biological process | RNA splicing Inferred from electronic annotation. Source: UniProtKB-KW mRNA processingInferred from electronic annotation. Source: UniProtKB-KW |
| Cellular component | chloroplast stroma Inferred from electronic annotation. Source: UniProtKB-SubCell ribonucleoprotein complexInferred from electronic annotation. Source: UniProtKB-KW |
| Molecular function | aminoacyl-tRNA hydrolase activity Inferred from electronic annotation. Source: InterPro |
| Complete GO annotation... | |
Sequence annotation (Features)
Sequences
| ||||||||||||||||||
References
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AP003214 Genomic DNA. Translation: BAD52792.1. AP008207 Genomic DNA. Translation: BAF03849.1. AK068422 mRNA. No translation available. |
| RefSeq | NP_001041935.1. NM_001048470.1. |
| UniGene | Os.35230. |
3D structure databases | |
| HSSP | HSSP built from PDB template 2PTH based on UniProtKB P0A7D1. |
| ProteinModelPortal | Q5ZCL8. |
| SMR | Q5ZCL8. Positions 62-252. |
| ModBase | Search... |
Protein-protein interaction databases | |
| STRING | Q5ZCL8. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| GeneID | 4325801. |
| KEGG | osa:4325801. |
Organism-specific databases | |
| Gramene | Q5ZCL8. |
Phylogenomic databases | |
| HOGENOM | HBG610927. |
| PhylomeDB | Q5ZCL8. |
| ProtClustDB | CLSN2686133. |
Family and domain databases | |
| InterPro | IPR001328. Pept_tRNA_hydro. IPR018171. Pept_tRNA_hydro_CS. [Graphical view] |
| Gene3D | G3DSA:3.40.50.1470. Pept_tRNA_hydro. 1 hit. |
| KO | K01056. |
| PANTHER | PTHR17224. Pept_tRNA_hydro. 1 hit. |
| Pfam | PF01195. Pept_tRNA_hydro. 1 hit. [Graphical view] |
| SUPFAM | SSF53178. Pept_tRNA_hydro. 1 hit. |
| TIGRFAMs | TIGR00447. Pth. 1 hit. |
| PROSITE | PS01195. PEPT_TRNA_HYDROL_1. 1 hit. PS01196. PEPT_TRNA_HYDROL_2. False negative. [Graphical view] |
| ProtoNet | Search... |
Entry information
| Entry name | CRS2_ORYSJ | ||||||||
| Accession | Primary (citable) accession number: Q5ZCL8 | ||||||||
| Entry history |
| ||||||||
| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Plant Protein Annotation Program | ||||||||
Relevant documents
| Oryza sativa (rice) Index of Oryza sativa entries and their corresponding gene designations |
| SIMILARITY comments Index of protein domains and families |

Clusters with