Reviewed, UniProtKB/Swiss-Prot Q5ZCK5 (CML16_ORYSJ)

Names and origin

Protein names

Recommended name:
    Probable calcium-binding protein CML16
Alternative name(s):
    Calmodulin-like protein 16

Gene names

Name:	CML16
Ordered Locus Names:	Os01g0135700, LOC_Os01g04330
ORF Names:	OSJNBa0083M16.46, OsJ_000267

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	181 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Function	Potential calcium sensor By similarity.
Sequence similarities	Contains 4 EF-hand domains.
Caution	Although assigned as a calmodulin family member by Ref.6, it only contains EF-hand domains.

Ontologies

Keywords
Domain	Repeat
Ligand	Calcium
Gene Ontology (GO)
Molecular function	calcium ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 181	181	Probable calcium-binding protein CML16		PRO_0000338431
Regions
	Domain	23 – 58	36	EF-hand 1
	Domain	63 – 98	36	EF-hand 2
	Domain	100 – 135	36	EF-hand 3
	Domain	136 – 171	36	EF-hand 4
	Calcium binding	36 – 47	12	1 Potential
	Calcium binding	76 – 87	12	2 Potential
	Calcium binding	113 – 124	12	3 Potential
	Calcium binding	149 – 160	12	4 Potential
	Compositional bias	11 – 14	4	Poly-Gln

Sequences

	Sequence		Length	Mass (Da)
	Q5ZCK5-1 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: F99BDE20447306A8	FASTA	181	19,263
	10 20 30 40 50 60 MSNTTEKKMP QQQQVERPTA LAPADAEIER VFTRFDADGD GRISPSELAA VTRAIAPPPS 70 80 90 100 110 120 ESAGGREVAA MMNELDTDRD GFVDLGEFAA FHGRGRGDAE HEAELRAAFD VYDVDGDGRI 130 140 150 160 170 180 TAAELGKVLG RIGEGCSAEE CERMIASVDV DGDGCVGFEE FKKMMCRDAA ATGGADKAKT E

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"The genomes of Oryza sativa: a history of duplications." Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S., Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L. , Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T., Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W., Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L., Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J., Samudrala R., Wang J., Wong G.K.-S., Yang H. PLoS Biol. 3:266-281(2005) [PubMed: 15685292] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[5]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[6]	"Genome-wide identification and analyses of the rice calmodulin and related potential calcium sensor proteins." Boonburapong B., Buaboocha T. BMC Plant Biol. 7:4-4(2007) [PubMed: 17263873] [Abstract] Cited for: GENE FAMILY AND NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP003214 Genomic DNA. Translation: BAD52815.1. AP008207 Genomic DNA. Translation: BAF03864.1. Different initiation. CM000138 Genomic DNA. Translation: EAZ10442.1. AK062711 mRNA. No translation available.
RefSeq	NP_001041950.1.
UniGene	Os.36767
3D structure databases
HSSP	HSSP built from PDB template 2F2O based on UniProtKB P62157.
ModBase	Search...
Genome annotation databases
GeneID	4325693.
GenomeReviews	Gene locus CML16 in contig AP008207_GR.
KEGG	osa:4325693.
Organism-specific databases
Gramene	Q5ZCK5.
Family and domain databases
InterPro	IPR003299. Calflagin_bd. IPR011992. EF-Hand_type. IPR018247. EF_Hand_1_Ca_BS. IPR018249. EF_HAND_2. IPR002048. EF_hand_Ca_bd. IPR018248. EF_Hand_dom. [Graphical view]
Gene3D	G3DSA:1.10.238.10. EF-Hand_type. 1 hit.
Pfam	PF00036. efhand. 4 hits. [Graphical view]
PRINTS	PR01362. CALFLAGIN.
SMART	SM00054. EFh. 4 hits. [Graphical view]
PROSITE	PS00018. EF_HAND_1. 4 hits. PS50222. EF_HAND_2. 4 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

CML16_ORYSJ

Accession

Primary (citable) accession number: Q5ZCK5
Secondary accession number(s): Q0JQW4

Entry history

Integrated into UniProtKB/Swiss-Prot:	June 10, 2008
Last sequence update:	November 23, 2004
Last modified:	November 24, 2009
This is version 38 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)