Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

NFA_6770

Organism
Nocardia farcinica (strain IFM 10152)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNFAR247156:GJ9T-697-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:NFA_6770Imported
OrganismiNocardia farcinica (strain IFM 10152)Imported
Taxonomic identifieri247156 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
ProteomesiUP000006820: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi247156.nfa6770.

Structurei

3D structure databases

ProteinModelPortaliQ5Z219.
SMRiQ5Z219. Positions 18-292.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5Z219-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASRRAFDGG AGRPPVEVEL SNLDKVLYPA TGTTKGEVIA YYTAIAEAML
60 70 80 90 100
PHIAGRPVTR KRWPNGVEAP SFFEKNLAEH APPWLERRVL EHSDRRVAYP
110 120 130 140 150
LIDSEAGLAW IGQQASLEVH VPQWRFDGAA MGPATRIVFD LDPGPGVGLP
160 170 180 190 200
ECAEVALAVR DMIEDIGMHA FPVTSGSKGI HLYVPLDRVL SPGGASTVAK
210 220 230 240 250
QVATNLEKLR PDLVTATMAK AVRRGKVFLD WSQNNPAKTT IAPYSLRGRA
260 270 280 290 300
EPNAAAPRTW AEIEDAATLR HLRFDEVLAR WRDDGDLLAD LDPPLSRRGA
310 320 330 340 350
DALPGGADAL AKYRSMRDPA RTPEPVPAEP PSRGADNRFV VQEHHARRLH
360 370 380 390 400
WDVRLERDGV LASWAVPKGP PTTPKQNRLA VHTEDHPLEY LHFHGVIPKG
410 420 430 440 450
EYGAGEMTIW DTGTYETEKW RDDEVIVRFH GSKLTGRYAL IQTNGNQWLM
460 470 480 490 500
HLMREQPADA ETPVGAETPV GAEDSGGPAV DAEIRDETAG DADAAGGRRS
510 520 530 540 550
RTTAGAEVGR RGATPVPRGL SPMLAVSGEV GPLDGEQWCF ETKWDGFRLI
560 570 580 590 600
AEIDAGAVTL RSRAGNVVTD RYPRIAAVLA EELAGHRAVL DGEAVVFDEH
610 620 630 640 650
NVAQVALLQA DPARAEFVAF DVLYLDGTSL LRKRFADRRR VLEALGAAAP
660 670 680 690 700
SLRVPPALDG PGAEALRYSE EHGLEGVIAK RWDSVYLPGK RGHSWVKQRN
710 720 730 740 750
WRIQPVVVGG YRRSGARDFK SLLVGIPHDG ELIYVGRVGT GFGEQDMTAL
760 770 780 790 800
ARRLRGLERK TSPFANALTA EERKEAVWVR PTITGRVRFM NWTDTGRLWH

PAWLGEDD
Length:808
Mass (Da):88,633
Last modified:November 23, 2004 - v1
Checksum:iF1EC39186E219F78
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006618 Genomic DNA. Translation: BAD55522.1.
RefSeqiWP_011207209.1. NC_006361.1.
YP_116886.1. NC_006361.1.

Genome annotation databases

EnsemblBacteriaiBAD55522; BAD55522; NFA_6770.
GeneIDi3110208.
KEGGinfa:nfa6770.
PATRICi22730870. VBINocFar94200_0696.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006618 Genomic DNA. Translation: BAD55522.1.
RefSeqiWP_011207209.1. NC_006361.1.
YP_116886.1. NC_006361.1.

3D structure databases

ProteinModelPortaliQ5Z219.
SMRiQ5Z219. Positions 18-292.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi247156.nfa6770.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD55522; BAD55522; NFA_6770.
GeneIDi3110208.
KEGGinfa:nfa6770.
PATRICi22730870. VBINocFar94200_0696.

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Enzyme and pathway databases

BioCyciNFAR247156:GJ9T-697-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IFM 10152Imported.

Entry informationi

Entry nameiQ5Z219_NOCFA
AccessioniPrimary (citable) accession number: Q5Z219
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: March 4, 2015
This is version 63 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.