Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q5Z219

- Q5Z219_NOCFA

UniProt

Q5Z219 - Q5Z219_NOCFA

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

NFA_6770

Organism
Nocardia farcinica (strain IFM 10152)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 61 (01 Oct 2014)
      Sequence version 1 (23 Nov 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNFAR247156:GJ9T-697-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:NFA_6770Imported
    OrganismiNocardia farcinica (strain IFM 10152)Imported
    Taxonomic identifieri247156 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
    ProteomesiUP000006820: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi247156.nfa6770.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5Z219.
    SMRiQ5Z219. Positions 18-292.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiSKGIHLY.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5Z219-1 [UniParc]FASTAAdd to Basket

    « Hide

    MASRRAFDGG AGRPPVEVEL SNLDKVLYPA TGTTKGEVIA YYTAIAEAML    50
    PHIAGRPVTR KRWPNGVEAP SFFEKNLAEH APPWLERRVL EHSDRRVAYP 100
    LIDSEAGLAW IGQQASLEVH VPQWRFDGAA MGPATRIVFD LDPGPGVGLP 150
    ECAEVALAVR DMIEDIGMHA FPVTSGSKGI HLYVPLDRVL SPGGASTVAK 200
    QVATNLEKLR PDLVTATMAK AVRRGKVFLD WSQNNPAKTT IAPYSLRGRA 250
    EPNAAAPRTW AEIEDAATLR HLRFDEVLAR WRDDGDLLAD LDPPLSRRGA 300
    DALPGGADAL AKYRSMRDPA RTPEPVPAEP PSRGADNRFV VQEHHARRLH 350
    WDVRLERDGV LASWAVPKGP PTTPKQNRLA VHTEDHPLEY LHFHGVIPKG 400
    EYGAGEMTIW DTGTYETEKW RDDEVIVRFH GSKLTGRYAL IQTNGNQWLM 450
    HLMREQPADA ETPVGAETPV GAEDSGGPAV DAEIRDETAG DADAAGGRRS 500
    RTTAGAEVGR RGATPVPRGL SPMLAVSGEV GPLDGEQWCF ETKWDGFRLI 550
    AEIDAGAVTL RSRAGNVVTD RYPRIAAVLA EELAGHRAVL DGEAVVFDEH 600
    NVAQVALLQA DPARAEFVAF DVLYLDGTSL LRKRFADRRR VLEALGAAAP 650
    SLRVPPALDG PGAEALRYSE EHGLEGVIAK RWDSVYLPGK RGHSWVKQRN 700
    WRIQPVVVGG YRRSGARDFK SLLVGIPHDG ELIYVGRVGT GFGEQDMTAL 750
    ARRLRGLERK TSPFANALTA EERKEAVWVR PTITGRVRFM NWTDTGRLWH 800
    PAWLGEDD 808
    Length:808
    Mass (Da):88,633
    Last modified:November 23, 2004 - v1
    Checksum:iF1EC39186E219F78
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP006618 Genomic DNA. Translation: BAD55522.1.
    RefSeqiYP_116886.1. NC_006361.1.

    Genome annotation databases

    EnsemblBacteriaiBAD55522; BAD55522; NFA_6770.
    GeneIDi3110208.
    KEGGinfa:nfa6770.
    PATRICi22730870. VBINocFar94200_0696.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP006618 Genomic DNA. Translation: BAD55522.1 .
    RefSeqi YP_116886.1. NC_006361.1.

    3D structure databases

    ProteinModelPortali Q5Z219.
    SMRi Q5Z219. Positions 18-292.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 247156.nfa6770.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD55522 ; BAD55522 ; NFA_6770 .
    GeneIDi 3110208.
    KEGGi nfa:nfa6770.
    PATRICi 22730870. VBINocFar94200_0696.

    Phylogenomic databases

    KOi K01971.
    OMAi SKGIHLY.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci NFAR247156:GJ9T-697-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IFM 10152Imported.

    Entry informationi

    Entry nameiQ5Z219_NOCFA
    AccessioniPrimary (citable) accession number: Q5Z219
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 23, 2004
    Last sequence update: November 23, 2004
    Last modified: October 1, 2014
    This is version 61 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3