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Q5Z219 (Q5Z219_NOCFA) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 55. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Putative ATP-dependent DNA ligase EMBL BAD55522.1
Gene names
Ordered Locus Names:NFA_6770 EMBL BAD55522.1
OrganismNocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD55522.1
Taxonomic identifier247156 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia ›

Protein attributes

Sequence length808 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAD55522.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

DNA primase activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5Z219 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: F1EC39186E219F78

FASTA80888,633
        10         20         30         40         50         60 
MASRRAFDGG AGRPPVEVEL SNLDKVLYPA TGTTKGEVIA YYTAIAEAML PHIAGRPVTR 

        70         80         90        100        110        120 
KRWPNGVEAP SFFEKNLAEH APPWLERRVL EHSDRRVAYP LIDSEAGLAW IGQQASLEVH 

       130        140        150        160        170        180 
VPQWRFDGAA MGPATRIVFD LDPGPGVGLP ECAEVALAVR DMIEDIGMHA FPVTSGSKGI 

       190        200        210        220        230        240 
HLYVPLDRVL SPGGASTVAK QVATNLEKLR PDLVTATMAK AVRRGKVFLD WSQNNPAKTT 

       250        260        270        280        290        300 
IAPYSLRGRA EPNAAAPRTW AEIEDAATLR HLRFDEVLAR WRDDGDLLAD LDPPLSRRGA 

       310        320        330        340        350        360 
DALPGGADAL AKYRSMRDPA RTPEPVPAEP PSRGADNRFV VQEHHARRLH WDVRLERDGV 

       370        380        390        400        410        420 
LASWAVPKGP PTTPKQNRLA VHTEDHPLEY LHFHGVIPKG EYGAGEMTIW DTGTYETEKW 

       430        440        450        460        470        480 
RDDEVIVRFH GSKLTGRYAL IQTNGNQWLM HLMREQPADA ETPVGAETPV GAEDSGGPAV 

       490        500        510        520        530        540 
DAEIRDETAG DADAAGGRRS RTTAGAEVGR RGATPVPRGL SPMLAVSGEV GPLDGEQWCF 

       550        560        570        580        590        600 
ETKWDGFRLI AEIDAGAVTL RSRAGNVVTD RYPRIAAVLA EELAGHRAVL DGEAVVFDEH 

       610        620        630        640        650        660 
NVAQVALLQA DPARAEFVAF DVLYLDGTSL LRKRFADRRR VLEALGAAAP SLRVPPALDG 

       670        680        690        700        710        720 
PGAEALRYSE EHGLEGVIAK RWDSVYLPGK RGHSWVKQRN WRIQPVVVGG YRRSGARDFK 

       730        740        750        760        770        780 
SLLVGIPHDG ELIYVGRVGT GFGEQDMTAL ARRLRGLERK TSPFANALTA EERKEAVWVR 

       790        800 
PTITGRVRFM NWTDTGRLWH PAWLGEDD

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References

[1]"The complete genomic sequence of Nocardia farcinica IFM 10152."
Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M.
Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IFM 10152 EMBL BAD55522.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP006618 Genomic DNA. Translation: BAD55522.1.
RefSeqYP_116886.1. NC_006361.1.

3D structure databases

ProteinModelPortalQ5Z219.
SMRQ5Z219. Positions 18-292.
ModBaseSearch...

Protein-protein interaction databases

STRING247156.nfa6770.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD55522; BAD55522; NFA_6770.
GeneID3110208.
KEGGnfa:nfa6770.
PATRIC22730870. VBINocFar94200_0696.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMASGSKGIH.
ProtClustDBPRK09632.

Enzyme and pathway databases

BioCycNFAR247156:GJ9T-697-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5Z219_NOCFA
AccessionPrimary (citable) accession number: Q5Z219
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: May 1, 2013
This is version 55 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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