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Q5Z219

- Q5Z219_NOCFA

UniProt

Q5Z219 - Q5Z219_NOCFA

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Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

NFA_6770

Organism
Nocardia farcinica (strain IFM 10152)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNFAR247156:GJ9T-697-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:NFA_6770Imported
OrganismiNocardia farcinica (strain IFM 10152)Imported
Taxonomic identifieri247156 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
ProteomesiUP000006820: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi247156.nfa6770.

Structurei

3D structure databases

ProteinModelPortaliQ5Z219.
SMRiQ5Z219. Positions 18-292.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiSKGIHLY.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5Z219-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MASRRAFDGG AGRPPVEVEL SNLDKVLYPA TGTTKGEVIA YYTAIAEAML
60 70 80 90 100
PHIAGRPVTR KRWPNGVEAP SFFEKNLAEH APPWLERRVL EHSDRRVAYP
110 120 130 140 150
LIDSEAGLAW IGQQASLEVH VPQWRFDGAA MGPATRIVFD LDPGPGVGLP
160 170 180 190 200
ECAEVALAVR DMIEDIGMHA FPVTSGSKGI HLYVPLDRVL SPGGASTVAK
210 220 230 240 250
QVATNLEKLR PDLVTATMAK AVRRGKVFLD WSQNNPAKTT IAPYSLRGRA
260 270 280 290 300
EPNAAAPRTW AEIEDAATLR HLRFDEVLAR WRDDGDLLAD LDPPLSRRGA
310 320 330 340 350
DALPGGADAL AKYRSMRDPA RTPEPVPAEP PSRGADNRFV VQEHHARRLH
360 370 380 390 400
WDVRLERDGV LASWAVPKGP PTTPKQNRLA VHTEDHPLEY LHFHGVIPKG
410 420 430 440 450
EYGAGEMTIW DTGTYETEKW RDDEVIVRFH GSKLTGRYAL IQTNGNQWLM
460 470 480 490 500
HLMREQPADA ETPVGAETPV GAEDSGGPAV DAEIRDETAG DADAAGGRRS
510 520 530 540 550
RTTAGAEVGR RGATPVPRGL SPMLAVSGEV GPLDGEQWCF ETKWDGFRLI
560 570 580 590 600
AEIDAGAVTL RSRAGNVVTD RYPRIAAVLA EELAGHRAVL DGEAVVFDEH
610 620 630 640 650
NVAQVALLQA DPARAEFVAF DVLYLDGTSL LRKRFADRRR VLEALGAAAP
660 670 680 690 700
SLRVPPALDG PGAEALRYSE EHGLEGVIAK RWDSVYLPGK RGHSWVKQRN
710 720 730 740 750
WRIQPVVVGG YRRSGARDFK SLLVGIPHDG ELIYVGRVGT GFGEQDMTAL
760 770 780 790 800
ARRLRGLERK TSPFANALTA EERKEAVWVR PTITGRVRFM NWTDTGRLWH

PAWLGEDD
Length:808
Mass (Da):88,633
Last modified:November 23, 2004 - v1
Checksum:iF1EC39186E219F78
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP006618 Genomic DNA. Translation: BAD55522.1.
RefSeqiYP_116886.1. NC_006361.1.

Genome annotation databases

EnsemblBacteriaiBAD55522; BAD55522; NFA_6770.
GeneIDi3110208.
KEGGinfa:nfa6770.
PATRICi22730870. VBINocFar94200_0696.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP006618 Genomic DNA. Translation: BAD55522.1 .
RefSeqi YP_116886.1. NC_006361.1.

3D structure databases

ProteinModelPortali Q5Z219.
SMRi Q5Z219. Positions 18-292.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 247156.nfa6770.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD55522 ; BAD55522 ; NFA_6770 .
GeneIDi 3110208.
KEGGi nfa:nfa6770.
PATRICi 22730870. VBINocFar94200_0696.

Phylogenomic databases

KOi K01971.
OMAi SKGIHLY.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci NFAR247156:GJ9T-697-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IFM 10152Imported.

Entry informationi

Entry nameiQ5Z219_NOCFA
AccessioniPrimary (citable) accession number: Q5Z219
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: October 1, 2014
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3