Q5Z1V4 (RS17_NOCFA) Reviewed, UniProtKB/Swiss-Prot

Names and origin

Protein names

Recommended name:
30S ribosomal protein S17

Gene names

Name:	rpsQ
Ordered Locus Names:	NFA_7420

Organism

Nocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP]

Taxonomic identifier

247156 [NCBI]

Taxonomic lineage

Bacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia

Protein attributes

Sequence length	89 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA By similarity. HAMAP MF_01345_B
Subunit structure	Part of the 30S ribosomal subunit.
Sequence similarities	Belongs to the ribosomal protein S17P family.

Ontologies

Keywords
Ligand	RNA-binding rRNA-binding
Molecular function	Ribonucleoprotein Ribosomal protein
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	translation Inferred from electronic annotation. Source: InterPro
Cellular component	ribosome Inferred from electronic annotation. Source: UniProtKB-KW
Molecular function	rRNA binding Inferred from electronic annotation. Source: UniProtKB-KW structural constituent of ribosome Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 89	89	30S ribosomal protein S17 HAMAP MF_01345_B		PRO_0000233523

Sequences

	Sequence		Length	Mass (Da)
	Q5Z1V4 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: 05442A2389A32BD3	FASTA	89	10,302
	10 20 30 40 50 60 MSEKTVERGR RKVRIGYVVS DKMNKTIVVE LEDRVKHPLY GKIIRTTSKV KAHDENEIAG 70 80 VGDRVQLMET RPLSATKRWR LVEVLEKAK

References

[1]

"The complete genomic sequence of Nocardia farcinica IFM 10152." Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed: 15466710] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IFM 10152.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006618 Genomic DNA. Translation: BAD55587.1.
RefSeq	YP_116951.1. NC_006361.1.
3D structure databases
ProteinModelPortal	Q5Z1V4.
SMR	Q5Z1V4. Positions 10-88.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3111527.
GenomeReviews	Gene locus NFA_7420 in contig AP006618_GR.
KEGG	nfa:nfa7420.
NMPDR	fig|247156.1.peg.788.
PATRIC	22730998. VBINocFar94200_0758.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG750455.
OMA	TIRECRP.
ProtClustDB	PRK05610.
Enzyme and pathway databases
BioCyc	NFAR247156:NFA7420-MONOMER.
Family and domain databases
HAMAP	MF_01345_B. Ribosomal_S17_B. [Tree]
InterPro	IPR012340. NA-bd_OB-fold. IPR016027. NA-bd_OB-fold-like. IPR000266. Ribosomal_S17. IPR019984. Ribosomal_S17_bac-type. IPR019979. Ribosomal_S17_CS. [Graphical view]
Gene3D	G3DSA:2.40.50.140. OB_NA_bd_sub. 1 hit.
KO	K02961.
PANTHER	PTHR10744. Ribosomal_S17. 1 hit.
Pfam	PF00366. Ribosomal_S17. 1 hit. [Graphical view]
PRINTS	PR00973. RIBOSOMALS17.
ProDom	PD001295. Ribosomal_S17. 1 hit. [Graphical view] [Entries sharing at least one domain]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR03635. S17_bact. 1 hit.
PROSITE	PS00056. RIBOSOMAL_S17. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

RS17_NOCFA

Accession

Primary (citable) accession number: Q5Z1V4

Entry history

Integrated into UniProtKB/Swiss-Prot:	May 2, 2006
Last sequence update:	November 23, 2004
Last modified:	January 25, 2012
This is version 53 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation program

Prokaryotic Protein Annotation Program