Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Q5Z0W8

- GLGB_NOCFA

UniProt

Q5Z0W8 - GLGB_NOCFA

Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Nocardia farcinica (strain IFM 10152)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 74 (01 Oct 2014)
      Sequence version 1 (23 Nov 2004)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

    Catalytic activityi

    Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei424 – 4241NucleophileUniRule annotation
    Active sitei476 – 4761Proton donorUniRule annotation

    GO - Molecular functioni

    1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
    2. cation binding Source: InterPro
    3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

    GO - Biological processi

    1. glycogen biosynthetic process Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    Glycosyltransferase, Transferase

    Keywords - Biological processi

    Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

    Enzyme and pathway databases

    BioCyciNFAR247156:GJ9T-1106-MONOMER.
    UniPathwayiUPA00164.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
    Alternative name(s):
    1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
    Alpha-(1->4)-glucan branching enzymeUniRule annotation
    Glycogen branching enzymeUniRule annotation
    Short name:
    BEUniRule annotation
    Gene namesi
    Name:glgBUniRule annotation
    Ordered Locus Names:NFA_10780
    OrganismiNocardia farcinica (strain IFM 10152)
    Taxonomic identifieri247156 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
    ProteomesiUP000006820: Chromosome

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Chaini1 – 7447441,4-alpha-glucan branching enzyme GlgBPRO_0000188721Add
    BLAST

    Interactioni

    Subunit structurei

    Monomer.UniRule annotation

    Protein-protein interaction databases

    STRINGi247156.nfa10780.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5Z0W8.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

    Phylogenomic databases

    eggNOGiCOG0296.
    KOiK00700.
    OMAiVACVFNF.
    OrthoDBiEOG6JX7GT.

    Family and domain databases

    Gene3Di2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPiMF_00685. GlgB.
    InterProiIPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view]
    PANTHERiPTHR10357. PTHR10357. 1 hit.
    PfamiPF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000463. GlgB. 1 hit.
    SUPFAMiSSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    Q5Z0W8-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSGPEDPADR RHGEVPAPRR DIPRPLVERR DLMLLAAGTH RDPHTVLGAH    50
    PHPDGTVVRV LRPHAAKVSV RVGGVDHPLD SVGYGVFAAV LPHPELMDYR 100
    IVTEYPGGPT VIAADGFRFL PTLGELDLHL IGEGRHEHLW HVLGAHPRRY 150
    TTLDGPVSGT SFAVWAPNAR GVTVIGDFDG WSGNTAPMRA LGTSGVWEVF 200
    VPDVGSGTKY KYRVHGADGR VVDHADPLAF ATELPPATAS VVTGSDYTWQ 250
    DAQWLERRRS TDPTRSPMSV YEVHLGSWRP GLGYRELAEQ LADYVRAAGY 300
    THVELLPVAE HPFGGSWGYQ VTSYYAPTAR FGSPDDFRAF VDHLHGAGIG 350
    VLLDWVPAHF PRDEWALARF DGTPLYEHPD PRRGEQLDWG TYVFDFGRNE 400
    VRNFLVANAR FWIEEFHIDG LRVDAVASML YLDYSRGENW EPNIHGGREN 450
    LEAVAFLREL NDVVHRAHPG VVTIAEESTT WPGVTRGTEV GGLGFTMKWN 500
    MGWMHDTLGF LARDPIHRSW HHNEITFSLV YAWSENYVLP ISHDEVVHGK 550
    GTLWTRMPGD DFAKAAGVRA LLAYMWAHPG KQLLFMGQDF GQFREWSHDR 600
    GLDWGELDNP LHRGIATAVR DLNRVYRATP ALWSQDTTPG GYAWIEADDR 650
    DRNVLAFLRY GSDGSTVACV FNFSGALHGE YRVGLPIAGE WTEILNTDAA 700
    DYGGSGVGNY GVVRTEEIPW HGRPVSATVA LAPNSAVWLA APRA 744
    Length:744
    Mass (Da):82,575
    Last modified:November 23, 2004 - v1
    Checksum:iEAF4657E36A7DAD4
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP006618 Genomic DNA. Translation: BAD55923.1.
    RefSeqiYP_117287.1. NC_006361.1.

    Genome annotation databases

    EnsemblBacteriaiBAD55923; BAD55923; NFA_10780.
    GeneIDi3109649.
    KEGGinfa:nfa10780.
    PATRICi22731722. VBINocFar94200_1114.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP006618 Genomic DNA. Translation: BAD55923.1 .
    RefSeqi YP_117287.1. NC_006361.1.

    3D structure databases

    ProteinModelPortali Q5Z0W8.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 247156.nfa10780.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD55923 ; BAD55923 ; NFA_10780 .
    GeneIDi 3109649.
    KEGGi nfa:nfa10780.
    PATRICi 22731722. VBINocFar94200_1114.

    Phylogenomic databases

    eggNOGi COG0296.
    KOi K00700.
    OMAi VACVFNF.
    OrthoDBi EOG6JX7GT.

    Enzyme and pathway databases

    UniPathwayi UPA00164 .
    BioCyci NFAR247156:GJ9T-1106-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.10. 2 hits.
    2.60.40.1180. 1 hit.
    3.20.20.80. 1 hit.
    HAMAPi MF_00685. GlgB.
    InterProi IPR006048. A-amylase_b_C.
    IPR006407. GlgB.
    IPR015902. Glyco_hydro_13.
    IPR013780. Glyco_hydro_13_b.
    IPR006047. Glyco_hydro_13_cat_dom.
    IPR004193. Glyco_hydro_13_N.
    IPR013781. Glyco_hydro_catalytic_dom.
    IPR017853. Glycoside_hydrolase_SF.
    IPR013783. Ig-like_fold.
    IPR014756. Ig_E-set.
    [Graphical view ]
    PANTHERi PTHR10357. PTHR10357. 1 hit.
    Pfami PF00128. Alpha-amylase. 1 hit.
    PF02806. Alpha-amylase_C. 1 hit.
    PF02922. CBM_48. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000463. GlgB. 1 hit.
    SUPFAMi SSF51445. SSF51445. 1 hit.
    SSF81296. SSF81296. 1 hit.
    TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IFM 10152.

    Entry informationi

    Entry nameiGLGB_NOCFA
    AccessioniPrimary (citable) accession number: Q5Z0W8
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: May 10, 2005
    Last sequence update: November 23, 2004
    Last modified: October 1, 2014
    This is version 74 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programProkaryotic Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Glycosyl hydrolases
      Classification of glycosyl hydrolase families and list of entries
    2. PATHWAY comments
      Index of metabolic and biosynthesis pathways
    3. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3