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Q5Z0W8

- GLGB_NOCFA

UniProt

Q5Z0W8 - GLGB_NOCFA

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Protein

1,4-alpha-glucan branching enzyme GlgB

Gene

glgB

Organism
Nocardia farcinica (strain IFM 10152)
Status
Reviewed - Annotation score: 3 out of 5- Protein inferred from homologyi

Functioni

Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position.UniRule annotation

Catalytic activityi

Transfers a segment of a (1->4)-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain.UniRule annotation

Pathwayi

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei424 – 4241NucleophileUniRule annotation
Active sitei476 – 4761Proton donorUniRule annotation

GO - Molecular functioni

  1. 1,4-alpha-glucan branching enzyme activity Source: UniProtKB-HAMAP
  2. cation binding Source: InterPro
  3. hydrolase activity, hydrolyzing O-glycosyl compounds Source: InterPro

GO - Biological processi

  1. glycogen biosynthetic process Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Glycosyltransferase, Transferase

Keywords - Biological processi

Carbohydrate metabolism, Glycogen biosynthesis, Glycogen metabolism

Enzyme and pathway databases

BioCyciNFAR247156:GJ9T-1106-MONOMER.
UniPathwayiUPA00164.

Names & Taxonomyi

Protein namesi
Recommended name:
1,4-alpha-glucan branching enzyme GlgBUniRule annotation (EC:2.4.1.18UniRule annotation)
Alternative name(s):
1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferaseUniRule annotation
Alpha-(1->4)-glucan branching enzymeUniRule annotation
Glycogen branching enzymeUniRule annotation
Short name:
BEUniRule annotation
Gene namesi
Name:glgBUniRule annotation
Ordered Locus Names:NFA_10780
OrganismiNocardia farcinica (strain IFM 10152)
Taxonomic identifieri247156 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
ProteomesiUP000006820: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 7447441,4-alpha-glucan branching enzyme GlgBPRO_0000188721Add
BLAST

Interactioni

Subunit structurei

Monomer.UniRule annotation

Protein-protein interaction databases

STRINGi247156.nfa10780.

Structurei

3D structure databases

ProteinModelPortaliQ5Z0W8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.UniRule annotation

Phylogenomic databases

eggNOGiCOG0296.
KOiK00700.
OMAiVACVFNF.
OrthoDBiEOG6JX7GT.

Family and domain databases

Gene3Di2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPiMF_00685. GlgB.
InterProiIPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view]
PIRSFiPIRSF000463. GlgB. 1 hit.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsiTIGR01515. branching_enzym. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5Z0W8-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSGPEDPADR RHGEVPAPRR DIPRPLVERR DLMLLAAGTH RDPHTVLGAH
60 70 80 90 100
PHPDGTVVRV LRPHAAKVSV RVGGVDHPLD SVGYGVFAAV LPHPELMDYR
110 120 130 140 150
IVTEYPGGPT VIAADGFRFL PTLGELDLHL IGEGRHEHLW HVLGAHPRRY
160 170 180 190 200
TTLDGPVSGT SFAVWAPNAR GVTVIGDFDG WSGNTAPMRA LGTSGVWEVF
210 220 230 240 250
VPDVGSGTKY KYRVHGADGR VVDHADPLAF ATELPPATAS VVTGSDYTWQ
260 270 280 290 300
DAQWLERRRS TDPTRSPMSV YEVHLGSWRP GLGYRELAEQ LADYVRAAGY
310 320 330 340 350
THVELLPVAE HPFGGSWGYQ VTSYYAPTAR FGSPDDFRAF VDHLHGAGIG
360 370 380 390 400
VLLDWVPAHF PRDEWALARF DGTPLYEHPD PRRGEQLDWG TYVFDFGRNE
410 420 430 440 450
VRNFLVANAR FWIEEFHIDG LRVDAVASML YLDYSRGENW EPNIHGGREN
460 470 480 490 500
LEAVAFLREL NDVVHRAHPG VVTIAEESTT WPGVTRGTEV GGLGFTMKWN
510 520 530 540 550
MGWMHDTLGF LARDPIHRSW HHNEITFSLV YAWSENYVLP ISHDEVVHGK
560 570 580 590 600
GTLWTRMPGD DFAKAAGVRA LLAYMWAHPG KQLLFMGQDF GQFREWSHDR
610 620 630 640 650
GLDWGELDNP LHRGIATAVR DLNRVYRATP ALWSQDTTPG GYAWIEADDR
660 670 680 690 700
DRNVLAFLRY GSDGSTVACV FNFSGALHGE YRVGLPIAGE WTEILNTDAA
710 720 730 740
DYGGSGVGNY GVVRTEEIPW HGRPVSATVA LAPNSAVWLA APRA
Length:744
Mass (Da):82,575
Last modified:November 23, 2004 - v1
Checksum:iEAF4657E36A7DAD4
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006618 Genomic DNA. Translation: BAD55923.1.
RefSeqiWP_011207608.1. NC_006361.1.
YP_117287.1. NC_006361.1.

Genome annotation databases

EnsemblBacteriaiBAD55923; BAD55923; NFA_10780.
GeneIDi3109649.
KEGGinfa:nfa10780.
PATRICi22731722. VBINocFar94200_1114.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006618 Genomic DNA. Translation: BAD55923.1 .
RefSeqi WP_011207608.1. NC_006361.1.
YP_117287.1. NC_006361.1.

3D structure databases

ProteinModelPortali Q5Z0W8.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 247156.nfa10780.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD55923 ; BAD55923 ; NFA_10780 .
GeneIDi 3109649.
KEGGi nfa:nfa10780.
PATRICi 22731722. VBINocFar94200_1114.

Phylogenomic databases

eggNOGi COG0296.
KOi K00700.
OMAi VACVFNF.
OrthoDBi EOG6JX7GT.

Enzyme and pathway databases

UniPathwayi UPA00164 .
BioCyci NFAR247156:GJ9T-1106-MONOMER.

Family and domain databases

Gene3Di 2.60.40.10. 2 hits.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
HAMAPi MF_00685. GlgB.
InterProi IPR006048. A-amylase_b_C.
IPR006407. GlgB.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR004193. Glyco_hydro_13_N.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR013783. Ig-like_fold.
IPR014756. Ig_E-set.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF02806. Alpha-amylase_C. 1 hit.
PF02922. CBM_48. 1 hit.
[Graphical view ]
PIRSFi PIRSF000463. GlgB. 1 hit.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF81296. SSF81296. 1 hit.
TIGRFAMsi TIGR01515. branching_enzym. 1 hit.
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IFM 10152.

Entry informationi

Entry nameiGLGB_NOCFA
AccessioniPrimary (citable) accession number: Q5Z0W8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 10, 2005
Last sequence update: November 23, 2004
Last modified: November 26, 2014
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Glycosyl hydrolases
    Classification of glycosyl hydrolase families and list of entries
  2. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  3. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3