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Q5YZV6 (Q5YZV6_NOCFA) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 72. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:NFA_14400 EMBL BAD56285.1
OrganismNocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD56285.1
Taxonomic identifier247156 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia

Protein attributes

Sequence length873 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

(S)-4-amino-5-oxopentanoate = 5-aminolevulinate.

Sequence similarities

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Sequences

Sequence LengthMass (Da)Tools
Q5YZV6 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: 8F16F1431C6B168F

FASTA87397,163
        10         20         30         40         50         60 
MLKHLARAGV LSARGAAEYS LAALRDRDPA SRDRRRAEAV LDFLVRMGPI YIKMGQIAAT 

        70         80         90        100        110        120 
RSDLFGPDWV STLRVLQDQT PHMTAAQSRR AVERELGRPL TQVFRRFDAE PVASASVAQV 

       130        140        150        160        170        180 
HVAELLDGRK VAVKLVKDGV PEQIEESLKS IATLLRLLNR ATPRLRELDV ATRFDEIARL 

       190        200        210        220        230        240 
LRPQADMTHE AAQQRRIHAN FAGHPYVTVP AVLDELVTSR MLVMQFMDGI PGKRVEEVGF 

       250        260        270        280        290        300 
PRDQLARRLQ DVIYTMLYMH GVCHGDPHPG NVMFGPTGEL ILLDYGVTVE LTEDEKWGLS 

       310        320        330        340        350        360 
SFYYACTRKE WHNAIDRFTR YFVLADEKLH RNRAAYDAEM AEVLRYHFDI SSSQWSTISY 

       370        380        390        400        410        420 
FNDVSAVLRK YDSRYTTNFT KVELVFLSCE GFASQIDPDI DIWANARRFT DRYSPYMSAE 

       430        440        450        460        470        480 
VEARFAAGFA EQMPTSLRLR DRAQATLVAP THIDRYFFPS GFPVFVESAA GGRVRDFDGN 

       490        500        510        520        530        540 
DYLDLSGGYG PHLLGYGHPA ITEAITTGVR RGLVNGIGNP GEIELAEQLV RAFPAADKAV 

       550        560        570        580        590        600 
LCNSGTEAIL FAIRMARGYR RRATVAKFEG HYHGFSDQGM VSSWFRFSGD RHRPDPVAGS 

       610        620        630        640        650        660 
QGVDPATVAN TVVMQYGDLD GLARIREHAD ELACVILEPM PTSVVALNVE FLTALRGLCT 

       670        680        690        700        710        720 
ELDIPLIFDE VVSGFRVAYG GVQVLADVHP DLTCLGKVIG GGLPCGAVVG RAELIDTAKS 

       730        740        750        760        770        780 
SQDPFYDYEN KVFAGGTLSG NSLTCAAGLA VLRHLDAHRE IYDELESNTQ RLAGMLREAT 

       790        800        810        820        830        840 
AQREIACRIN ASRSIFSLNF SHRAAGLYRD RMAGSNFKAT IALAYYMRKH QVYLPELHSF 

       850        860        870 
LISAAHTTED LDQIAHAFDK SLDEMLADNL FVL 

« Hide

References

[1]"The complete genomic sequence of Nocardia farcinica IFM 10152."
Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M.
Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IFM 10152 EMBL BAD56285.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP006618 Genomic DNA. Translation: BAD56285.1.
RefSeqYP_117649.1. NC_006361.1.

3D structure databases

ProteinModelPortalQ5YZV6.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING247156.nfa14400.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD56285; BAD56285; NFA_14400.
GeneID3106617.
KEGGnfa:nfa14400.
PATRIC22732508. VBINocFar94200_1502.

Organism-specific databases

CMRSearch...

Phylogenomic databases

OMADPDIDIW.
OrthoDBEOG6QVRHN.

Enzyme and pathway databases

BioCycNFAR247156:GJ9T-1474-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProIPR005814. Aminotrans_3.
IPR011009. Kinase-like_dom.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
IPR004147. UbiB_dom.
[Graphical view]
PANTHERPTHR11986. PTHR11986. 1 hit.
PfamPF03109. ABC1. 1 hit.
PF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
SSF56112. SSF56112. 2 hits.
PROSITEPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5YZV6_NOCFA
AccessionPrimary (citable) accession number: Q5YZV6
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: May 14, 2014
This is version 72 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)