Q5YZV6 (Q5YZV6_NOCFA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative aminotransferase EMBL BAD56285.1

Gene names

Ordered Locus Names:

NFA_14400 EMBL BAD56285.1

Organism

Nocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD56285.1

Taxonomic identifier

247156 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia › Nocardia farcinica

Protein attributes

Sequence length	873 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	(S)-4-amino-5-oxopentanoate = 5-aminolevulinate. SAAS SAAS004639
Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS004639
Subcellular location	Cytoplasm By similarity SAAS SAAS004639.
Sequence similarities	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. RuleBase RU003560

Ontologies

Keywords
Biological process	Porphyrin biosynthesis SAAS SAAS004639
Cellular component	Cytoplasm SAAS SAAS004639
Ligand	Pyridoxal phosphate RuleBase RU003560 SAAS SAAS004639
Molecular function	Aminotransferase EMBL BAD56285.1 Isomerase SAAS SAAS004639 Transferase
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	protoporphyrinogen IX biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Cellular_component	cytoplasm Inferred from electronic annotation. Source: UniProtKB-SubCell
Molecular_function	glutamate-1-semialdehyde 2,1-aminomutase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro transaminase activity Inferred from electronic annotation. Source: UniProtKB-KW transferase activity, transferring phosphorus-containing groups Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5YZV6 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: 8F16F1431C6B168F	FASTA	873	97,163
	10 20 30 40 50 60 MLKHLARAGV LSARGAAEYS LAALRDRDPA SRDRRRAEAV LDFLVRMGPI YIKMGQIAAT 70 80 90 100 110 120 RSDLFGPDWV STLRVLQDQT PHMTAAQSRR AVERELGRPL TQVFRRFDAE PVASASVAQV 130 140 150 160 170 180 HVAELLDGRK VAVKLVKDGV PEQIEESLKS IATLLRLLNR ATPRLRELDV ATRFDEIARL 190 200 210 220 230 240 LRPQADMTHE AAQQRRIHAN FAGHPYVTVP AVLDELVTSR MLVMQFMDGI PGKRVEEVGF 250 260 270 280 290 300 PRDQLARRLQ DVIYTMLYMH GVCHGDPHPG NVMFGPTGEL ILLDYGVTVE LTEDEKWGLS 310 320 330 340 350 360 SFYYACTRKE WHNAIDRFTR YFVLADEKLH RNRAAYDAEM AEVLRYHFDI SSSQWSTISY 370 380 390 400 410 420 FNDVSAVLRK YDSRYTTNFT KVELVFLSCE GFASQIDPDI DIWANARRFT DRYSPYMSAE 430 440 450 460 470 480 VEARFAAGFA EQMPTSLRLR DRAQATLVAP THIDRYFFPS GFPVFVESAA GGRVRDFDGN 490 500 510 520 530 540 DYLDLSGGYG PHLLGYGHPA ITEAITTGVR RGLVNGIGNP GEIELAEQLV RAFPAADKAV 550 560 570 580 590 600 LCNSGTEAIL FAIRMARGYR RRATVAKFEG HYHGFSDQGM VSSWFRFSGD RHRPDPVAGS 610 620 630 640 650 660 QGVDPATVAN TVVMQYGDLD GLARIREHAD ELACVILEPM PTSVVALNVE FLTALRGLCT 670 680 690 700 710 720 ELDIPLIFDE VVSGFRVAYG GVQVLADVHP DLTCLGKVIG GGLPCGAVVG RAELIDTAKS 730 740 750 760 770 780 SQDPFYDYEN KVFAGGTLSG NSLTCAAGLA VLRHLDAHRE IYDELESNTQ RLAGMLREAT 790 800 810 820 830 840 AQREIACRIN ASRSIFSLNF SHRAAGLYRD RMAGSNFKAT IALAYYMRKH QVYLPELHSF 850 860 870 LISAAHTTED LDQIAHAFDK SLDEMLADNL FVL

References

[1]

"The complete genomic sequence of Nocardia farcinica IFM 10152." Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IFM 10152 EMBL BAD56285.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006618 Genomic DNA. Translation: BAD56285.1.
RefSeq	YP_117649.1. NC_006361.1.
3D structure databases
ProteinModelPortal	Q5YZV6.
ModBase	Search...
Protein-protein interaction databases
STRING	247156.nfa14400.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAD56285; BAD56285; NFA_14400.
GeneID	3106617.
KEGG	nfa:nfa14400.
PATRIC	22732508. VBINocFar94200_1502.
Organism-specific databases
CMR	Search...
Phylogenomic databases
OMA	DPDIDIW.
ProtClustDB	CLSK765592.
Enzyme and pathway databases
BioCyc	NFAR247156:GJ9T-1474-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit. 3.90.1150.10. 2 hits.
InterPro	IPR004639. 4pyrrol_synth_GluAld_NH2Trfase. IPR005814. Aminotrans_3. IPR011009. Kinase-like_dom. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. IPR015422. PyrdxlP-dep_Trfase_major_sub2. IPR004147. UbiB_dom. [Graphical view]
PANTHER	PTHR11986. PTHR11986. 1 hit. PTHR11986:SF5. PTHR11986:SF5. 1 hit.
Pfam	PF03109. ABC1. 1 hit. PF00202. Aminotran_3. 1 hit. [Graphical view]
SUPFAM	SSF56112. Kinase_like. 1 hit. SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
PROSITE	PS00600. AA_TRANSFER_CLASS_3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5YZV6_NOCFA

Accession

Primary (citable) accession number: Q5YZV6

Entry history

Integrated into UniProtKB/TrEMBL:	November 23, 2004
Last sequence update:	November 23, 2004
Last modified:	May 1, 2013
This is version 66 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)