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Q5YVK4

- Q5YVK4_NOCFA

UniProt

Q5YVK4 - Q5YVK4_NOCFA

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

NFA_29400

Organism
Nocardia farcinica (strain IFM 10152)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 64 (01 Oct 2014)
      Sequence version 1 (23 Nov 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNFAR247156:GJ9T-2989-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Putative ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:NFA_29400Imported
    OrganismiNocardia farcinica (strain IFM 10152)Imported
    Taxonomic identifieri247156 [NCBI]
    Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
    ProteomesiUP000006820: Chromosome

    Interactioni

    Protein-protein interaction databases

    STRINGi247156.nfa29400.

    Structurei

    3D structure databases

    ProteinModelPortaliQ5YVK4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Phylogenomic databases

    KOiK01971.
    OMAiVEVKYGQ.
    OrthoDBiEOG661H49.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5YVK4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPAPSPMLA TAGRPPEDPR GWAFEMKWDG MRAVADAADG QCLLYSRNGK    50
    QVAGSFPEIV EAVAAAVGPH RVVLDGEIIA PEGARGAPSF SRLQRRMHVR 100
    APTPQLIREV PVLYMLFDLL ALDGHATVRL PYTERRDLLA RLDIARPPLQ 150
    LSPSWTDVDP AELAAAATDN GLEGLVAKRL DSVYQPGERS RAWLKMPFRR 200
    TTEAVIAGWL PGNGPFQKSF GSLVLGAHDA QGRLVHIGNV GTGWKQSERT 250
    RLRQRLDEIA RPDSPFDVPA PRPVAALAHW VSPELVADIE YREATAEGLR 300
    HPSWRGLRID KDPAEITWPA 320
    Length:320
    Mass (Da):35,116
    Last modified:November 23, 2004 - v1
    Checksum:iCC60AC8701113203
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP006618 Genomic DNA. Translation: BAD57787.1.
    RefSeqiYP_119151.1. NC_006361.1.

    Genome annotation databases

    EnsemblBacteriaiBAD57787; BAD57787; NFA_29400.
    GeneIDi3108372.
    KEGGinfa:nfa29400.
    PATRICi22735484. VBINocFar94200_2978.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP006618 Genomic DNA. Translation: BAD57787.1 .
    RefSeqi YP_119151.1. NC_006361.1.

    3D structure databases

    ProteinModelPortali Q5YVK4.
    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 247156.nfa29400.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAD57787 ; BAD57787 ; NFA_29400 .
    GeneIDi 3108372.
    KEGGi nfa:nfa29400.
    PATRICi 22735484. VBINocFar94200_2978.

    Phylogenomic databases

    KOi K01971.
    OMAi VEVKYGQ.
    OrthoDBi EOG661H49.

    Enzyme and pathway databases

    BioCyci NFAR247156:GJ9T-2989-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IFM 10152Imported.

    Entry informationi

    Entry nameiQ5YVK4_NOCFA
    AccessioniPrimary (citable) accession number: Q5YVK4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 23, 2004
    Last sequence update: November 23, 2004
    Last modified: October 1, 2014
    This is version 64 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3