Q5YVK4 (Q5YVK4_NOCFA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative ATP-dependent DNA ligase EMBL BAD57787.1

Gene names

Ordered Locus Names:

NFA_29400 EMBL BAD57787.1

Organism

Nocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD57787.1

Taxonomic identifier

247156 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia › Nocardia farcinica

Protein attributes

Sequence length	320 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL BAD57787.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5YVK4 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: CC60AC8701113203	FASTA	320	35,116
	10 20 30 40 50 60 MAPAPSPMLA TAGRPPEDPR GWAFEMKWDG MRAVADAADG QCLLYSRNGK QVAGSFPEIV 70 80 90 100 110 120 EAVAAAVGPH RVVLDGEIIA PEGARGAPSF SRLQRRMHVR APTPQLIREV PVLYMLFDLL 130 140 150 160 170 180 ALDGHATVRL PYTERRDLLA RLDIARPPLQ LSPSWTDVDP AELAAAATDN GLEGLVAKRL 190 200 210 220 230 240 DSVYQPGERS RAWLKMPFRR TTEAVIAGWL PGNGPFQKSF GSLVLGAHDA QGRLVHIGNV 250 260 270 280 290 300 GTGWKQSERT RLRQRLDEIA RPDSPFDVPA PRPVAALAHW VSPELVADIE YREATAEGLR 310 320 HPSWRGLRID KDPAEITWPA

References

[1]

"The complete genomic sequence of Nocardia farcinica IFM 10152." Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IFM 10152 EMBL BAD57787.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006618 Genomic DNA. Translation: BAD57787.1.
RefSeq	YP_119151.1. NC_006361.1.
3D structure databases
ProteinModelPortal	Q5YVK4.
ModBase	Search...
Protein-protein interaction databases
STRING	247156.nfa29400.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAD57787; BAD57787; NFA_29400.
GeneID	3108372.
KEGG	nfa:nfa29400.
PATRIC	22735484. VBINocFar94200_2978.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01971.
OMA	VEVKYGQ.
ProtClustDB	CLSK758265.
Enzyme and pathway databases
BioCyc	NFAR247156:GJ9T-2989-MONOMER.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR014146. DNA_pol_LigD_ligase_dom. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
TIGRFAMs	TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5YVK4_NOCFA

Accession

Primary (citable) accession number: Q5YVK4

Entry history

Integrated into UniProtKB/TrEMBL:	November 23, 2004
Last sequence update:	November 23, 2004
Last modified:	May 1, 2013
This is version 58 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)