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Q5YVK4 (Q5YVK4_NOCFA) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 62. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:NFA_29400 EMBL BAD57787.1
OrganismNocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD57787.1
Taxonomic identifier247156 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia

Protein attributes

Sequence length320 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL BAD57787.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
Q5YVK4 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: CC60AC8701113203

FASTA32035,116
        10         20         30         40         50         60 
MAPAPSPMLA TAGRPPEDPR GWAFEMKWDG MRAVADAADG QCLLYSRNGK QVAGSFPEIV 

        70         80         90        100        110        120 
EAVAAAVGPH RVVLDGEIIA PEGARGAPSF SRLQRRMHVR APTPQLIREV PVLYMLFDLL 

       130        140        150        160        170        180 
ALDGHATVRL PYTERRDLLA RLDIARPPLQ LSPSWTDVDP AELAAAATDN GLEGLVAKRL 

       190        200        210        220        230        240 
DSVYQPGERS RAWLKMPFRR TTEAVIAGWL PGNGPFQKSF GSLVLGAHDA QGRLVHIGNV 

       250        260        270        280        290        300 
GTGWKQSERT RLRQRLDEIA RPDSPFDVPA PRPVAALAHW VSPELVADIE YREATAEGLR 

       310        320 
HPSWRGLRID KDPAEITWPA 

« Hide

References

[1]"The complete genomic sequence of Nocardia farcinica IFM 10152."
Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M.
Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IFM 10152 EMBL BAD57787.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP006618 Genomic DNA. Translation: BAD57787.1.
RefSeqYP_119151.1. NC_006361.1.

3D structure databases

ProteinModelPortalQ5YVK4.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING247156.nfa29400.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD57787; BAD57787; NFA_29400.
GeneID3108372.
KEGGnfa:nfa29400.
PATRIC22735484. VBINocFar94200_2978.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01971.
OMAVEVKYGQ.
OrthoDBEOG661H49.
ProtClustDBCLSK758265.

Enzyme and pathway databases

BioCycNFAR247156:GJ9T-2989-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5YVK4_NOCFA
AccessionPrimary (citable) accession number: Q5YVK4
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: April 16, 2014
This is version 62 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)