Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q5YVK4

- Q5YVK4_NOCFA

UniProt

Q5YVK4 - Q5YVK4_NOCFA

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Putative ATP-dependent DNA ligase

Gene

NFA_29400

Organism
Nocardia farcinica (strain IFM 10152)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNFAR247156:GJ9T-2989-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Putative ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:NFA_29400Imported
OrganismiNocardia farcinica (strain IFM 10152)Imported
Taxonomic identifieri247156 [NCBI]
Taxonomic lineageiBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia
ProteomesiUP000006820: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi247156.nfa29400.

Structurei

3D structure databases

ProteinModelPortaliQ5YVK4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

KOiK01971.
OMAiVEVKYGQ.
OrthoDBiEOG661H49.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5YVK4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPAPSPMLA TAGRPPEDPR GWAFEMKWDG MRAVADAADG QCLLYSRNGK
60 70 80 90 100
QVAGSFPEIV EAVAAAVGPH RVVLDGEIIA PEGARGAPSF SRLQRRMHVR
110 120 130 140 150
APTPQLIREV PVLYMLFDLL ALDGHATVRL PYTERRDLLA RLDIARPPLQ
160 170 180 190 200
LSPSWTDVDP AELAAAATDN GLEGLVAKRL DSVYQPGERS RAWLKMPFRR
210 220 230 240 250
TTEAVIAGWL PGNGPFQKSF GSLVLGAHDA QGRLVHIGNV GTGWKQSERT
260 270 280 290 300
RLRQRLDEIA RPDSPFDVPA PRPVAALAHW VSPELVADIE YREATAEGLR
310 320
HPSWRGLRID KDPAEITWPA
Length:320
Mass (Da):35,116
Last modified:November 23, 2004 - v1
Checksum:iCC60AC8701113203
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP006618 Genomic DNA. Translation: BAD57787.1.
RefSeqiYP_119151.1. NC_006361.1.

Genome annotation databases

EnsemblBacteriaiBAD57787; BAD57787; NFA_29400.
GeneIDi3108372.
KEGGinfa:nfa29400.
PATRICi22735484. VBINocFar94200_2978.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP006618 Genomic DNA. Translation: BAD57787.1 .
RefSeqi YP_119151.1. NC_006361.1.

3D structure databases

ProteinModelPortali Q5YVK4.
ModBasei Search...
MobiDBi Search...

Protein-protein interaction databases

STRINGi 247156.nfa29400.

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAD57787 ; BAD57787 ; NFA_29400 .
GeneIDi 3108372.
KEGGi nfa:nfa29400.
PATRICi 22735484. VBINocFar94200_2978.

Phylogenomic databases

KOi K01971.
OMAi VEVKYGQ.
OrthoDBi EOG661H49.

Enzyme and pathway databases

BioCyci NFAR247156:GJ9T-2989-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02779. NHEJ_ligase_lig. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: IFM 10152Imported.

Entry informationi

Entry nameiQ5YVK4_NOCFA
AccessioniPrimary (citable) accession number: Q5YVK4
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: October 1, 2014
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3