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Q5YTV3 (Q5YTV3_NOCFA) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 61. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:NFA_35400 EMBL BAD58388.1
OrganismNocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD58388.1
Taxonomic identifier247156 [NCBI]
Taxonomic lineageBacteriaActinobacteriaActinobacteridaeActinomycetalesCorynebacterineaeNocardiaceaeNocardia

Protein attributes

Sequence length471 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q5YTV3 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: 930575B0765E6AB4

FASTA47151,908
        10         20         30         40         50         60 
MPLSHPSFPQ DPGPSEVAVN PVFTREPVSV PRDRLPAGEL DADIAYQVVH DELMLDGNAR 

        70         80         90        100        110        120 
LNLATFVTTW MEPSARVLMA ECFDKNMIDK DEYPRTADLE QRCVRMLADL WHAADPAHAT 

       130        140        150        160        170        180 
GCSTTGSSEA CMLAGLALKR RWQHRRRAAG LSTERPNLVM GANVQVCWEK FADYWDVEAR 

       190        200        210        220        230        240 
LVPMAGDRFH LTAEAALPHC DENTIGVVAV LGSTFDGSYE PVAEICAALD ELERQRGWDI 

       250        260        270        280        290        300 
PVHVDGASGA MVAPFCDPDL VWDFRLPRVA SVNTSGHKYG LVYPGVGWVV WRDAAALPED 

       310        320        330        340        350        360 
LIFRVNYLGG QMPTFALNFS RPGAQVVAQY YTFLRLGRSG YTRVQQYCRD VATRLADRIA 

       370        380        390        400        410        420 
ALGAFRLLTD GRQLPVFAFT LAEGETGYSV FDVSAALREQ GWLVPAYTFP ADREDLAVLR 

       430        440        450        460        470 
IVVRNGFSHD LADMLLDALA AVLPRLRAQD RPQHGPDTAT FAHGAQAPSG H 

« Hide

References

[1]"The complete genomic sequence of Nocardia farcinica IFM 10152."
Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M.
Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IFM 10152 EMBL BAD58388.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP006618 Genomic DNA. Translation: BAD58388.1.
RefSeqYP_119752.1. NC_006361.1.

3D structure databases

ProteinModelPortalQ5YTV3.
ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING247156.nfa35400.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAD58388; BAD58388; NFA_35400.
GeneID3107631.
KEGGnfa:nfa35400.
PATRIC22736696. VBINocFar94200_3584.

Organism-specific databases

CMRSearch...

Phylogenomic databases

KOK01580.
OMAIADLWNA.
OrthoDBEOG6TFCPW.

Enzyme and pathway databases

BioCycNFAR247156:GJ9T-3590-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameQ5YTV3_NOCFA
AccessionPrimary (citable) accession number: Q5YTV3
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: November 13, 2013
This is version 61 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)