Q5YTV3 (Q5YTV3_NOCFA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Putative glutamate decarboxylase EMBL BAD58388.1

Gene names

Ordered Locus Names:

NFA_35400 EMBL BAD58388.1

Organism

Nocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD58388.1

Taxonomic identifier

247156 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia › Nocardia farcinica

Protein attributes

Sequence length	471 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: InterPro pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5YTV3 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: 930575B0765E6AB4	FASTA	471	51,908
	10 20 30 40 50 60 MPLSHPSFPQ DPGPSEVAVN PVFTREPVSV PRDRLPAGEL DADIAYQVVH DELMLDGNAR 70 80 90 100 110 120 LNLATFVTTW MEPSARVLMA ECFDKNMIDK DEYPRTADLE QRCVRMLADL WHAADPAHAT 130 140 150 160 170 180 GCSTTGSSEA CMLAGLALKR RWQHRRRAAG LSTERPNLVM GANVQVCWEK FADYWDVEAR 190 200 210 220 230 240 LVPMAGDRFH LTAEAALPHC DENTIGVVAV LGSTFDGSYE PVAEICAALD ELERQRGWDI 250 260 270 280 290 300 PVHVDGASGA MVAPFCDPDL VWDFRLPRVA SVNTSGHKYG LVYPGVGWVV WRDAAALPED 310 320 330 340 350 360 LIFRVNYLGG QMPTFALNFS RPGAQVVAQY YTFLRLGRSG YTRVQQYCRD VATRLADRIA 370 380 390 400 410 420 ALGAFRLLTD GRQLPVFAFT LAEGETGYSV FDVSAALREQ GWLVPAYTFP ADREDLAVLR 430 440 450 460 470 IVVRNGFSHD LADMLLDALA AVLPRLRAQD RPQHGPDTAT FAHGAQAPSG H

References

[1]

"The complete genomic sequence of Nocardia farcinica IFM 10152." Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IFM 10152 EMBL BAD58388.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006618 Genomic DNA. Translation: BAD58388.1.
RefSeq	YP_119752.1. NC_006361.1.
3D structure databases
ProteinModelPortal	Q5YTV3.
ModBase	Search...
Protein-protein interaction databases
STRING	247156.nfa35400.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAD58388; BAD58388; NFA_35400.
GeneID	3107631.
KEGG	nfa:nfa35400.
PATRIC	22736696. VBINocFar94200_3584.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K01580.
OMA	PMDKEHM.
Enzyme and pathway databases
BioCyc	NFAR247156:GJ9T-3590-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5YTV3_NOCFA

Accession

Primary (citable) accession number: Q5YTV3

Entry history

Integrated into UniProtKB/TrEMBL:	November 23, 2004
Last sequence update:	November 23, 2004
Last modified:	May 1, 2013
This is version 59 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)