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Q5YPB9 (Y5120_NOCFA) Reviewed, UniProtKB/Swiss-Prot

Last modified January 25, 2012. Version 39. Feed History...

Clusters with 100%, 90%, 50% identity | Documents (2) | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
UPF0234 protein NFA_51200
Gene names
Ordered Locus Names:NFA_51200
OrganismNocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP]
Taxonomic identifier247156 [NCBI]
Taxonomic lineageBacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia

Protein attributes

Sequence length163 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the UPF0234 family.

Ontologies

Keywords
   Technical termComplete proteome
Gene Ontology (GO)
None. [Check GOA]

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Chain1 – 163163UPF0234 protein NFA_51200 HAMAP MF_00632
PRO_0000261955

Sequences

Sequence LengthMass (Da)Tools
Q5YPB9 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: B5AEAC76AEBF04EF

FASTA16318,166
        10         20         30         40         50         60 
MADSSFDVVS KVDRQEVDNA LHQAEKELNT RYDFRGTGAK IEWSGEDKIV LTAEAEERVK 

        70         80         90        100        110        120 
AALEVFKEKL IRRDISLKAF DAGEPVASGK TYKITGTLVQ GIDAEHAKKI SKKIRDEGPK 

       130        140        150        160 
GVKAQIQGDE LRVSSKKRDD LQAVIALLKS EDFGIALQFV NYR

« Hide

References

[1]"The complete genomic sequence of Nocardia farcinica IFM 10152."
Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M.
Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed: 15466710] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IFM 10152.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP006618 Genomic DNA. Translation: BAD59972.1.
RefSeqYP_121336.1. NC_006361.1.

3D structure databases

HSSPHSSP built from PDB template 1IN0 based on UniProtKB P44096.
ProteinModelPortalQ5YPB9.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3110837.
GenomeReviewsGene locus NFA_51200 in contig AP006618_GR.
KEGGnfa:nfa51200.
NMPDRfig|247156.1.peg.4920.
PATRIC22739819. VBINocFar94200_5128.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHBG290634.
OMALQFTNYR.
ProtClustDBPRK05412.

Enzyme and pathway databases

BioCycNFAR247156:NFA51200-MONOMER.

Family and domain databases

HAMAPMF_00632. UPF0234.
[Tree]
InterProIPR007551. DUF520.
[Graphical view]
KOK09767.
PfamPF04461. DUF520. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameY5120_NOCFA
AccessionPrimary (citable) accession number: Q5YPB9
Entry history
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: November 23, 2004
Last modified: January 25, 2012
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Relevant documents

Uncharacterized protein families (UPF)

List of uncharacterized protein family (UPF) entries

SIMILARITY comments

Index of protein domains and families

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