Q5YNU1 (Q5YNU1_NOCFA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Superoxide dismutase [Cu-Zn] RuleBase RU000393
EC=1.15.1.1 RuleBase RU000393

Gene names

Name:	sodC EMBL BAD60150.1
Ordered Locus Names:	NFA_52980 EMBL BAD60150.1

Organism

Nocardia farcinica (strain IFM 10152) [Complete proteome] [HAMAP] EMBL BAD60150.1

Taxonomic identifier

247156 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Actinobacteria › Actinobacteria › Actinobacteridae › Actinomycetales › Corynebacterineae › Nocardiaceae › Nocardia › Nocardia farcinica

Protein attributes

Sequence length	225 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000393
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000393
Cofactor	Binds 1 copper ion per subunit By similarity. RuleBase RU000393 Binds 1 zinc ion per subunit By similarity. RuleBase RU000393
Sequence similarities	Belongs to the Cu-Zn superoxide dismutase family. RuleBase RU000393

Ontologies

Keywords
Ligand	Copper RuleBase RU000393 Metal-binding RuleBase RU000393 Zinc RuleBase RU000393
Molecular function	Oxidoreductase RuleBase RU000393
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	superoxide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW superoxide dismutase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5YNU1 [UniParc]. Last modified November 23, 2004. Version 1. Checksum: D8A28D7C7D4490CF	FASTA	225	22,571
	10 20 30 40 50 60 MAPSTTRRPS WRTVTPVLAV AVLGLAACSN SQESSDVKGT TPPVWTGASA PATTGADHGE 70 80 90 100 110 120 HASGTGATAE LKDASGASVG TANITEEGGH LVITVEARGL RPGFHGLHFH QNGACEPNSV 130 140 150 160 170 180 APTGGPAGDF LSAGGHLQVG NANSHPASGD LTSLQVRGDG SARLVTTTDS VTLNDVKNRA 190 200 210 220 LIIHSGPDNF GNIPDRYQRE GGAGPDDTTL ATGDAGSRVA CGVVH

References

[1]

"The complete genomic sequence of Nocardia farcinica IFM 10152." Ishikawa J., Yamashita A., Mikami Y., Hoshino Y., Kurita H., Hotta K., Shiba T., Hattori M. Proc. Natl. Acad. Sci. U.S.A. 101:14925-14930(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IFM 10152 EMBL BAD60150.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AP006618 Genomic DNA. Translation: BAD60150.1.
RefSeq	YP_121514.1. NC_006361.1.
3D structure databases
ProteinModelPortal	Q5YNU1.
SMR	Q5YNU1. Positions 67-224.
ModBase	Search...
Protein-protein interaction databases
STRING	247156.nfa52980.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	BAD60150; BAD60150; NFA_52980.
GeneID	3111573.
KEGG	nfa:nfa52980.
PATRIC	22740195. VBINocFar94200_5316.
Organism-specific databases
CMR	Search...
Phylogenomic databases
KO	K04565.
OMA	YNQTNGT.
ProtClustDB	CLSK2766161.
Enzyme and pathway databases
BioCyc	NFAR247156:GJ9T-5369-MONOMER.
Family and domain databases
Gene3D	2.60.40.200. 1 hit.
InterPro	IPR024136. SOD_Cu/Zn. IPR024134. SOD_Cu/Zn_/chaperones. IPR018152. SOD_Cu/Zn_BS. IPR001424. SOD_Cu_Zn_dom. [Graphical view]
PANTHER	PTHR10003. PTHR10003. 1 hit. PTHR10003:SF11. PTHR10003:SF11. 1 hit.
Pfam	PF00080. Sod_Cu. 1 hit. [Graphical view]
SUPFAM	SSF49329. SOD_Cu_Zn. 1 hit.
PROSITE	PS00332. SOD_CU_ZN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

Q5YNU1_NOCFA

Accession

Primary (citable) accession number: Q5YNU1

Entry history

Integrated into UniProtKB/TrEMBL:	November 23, 2004
Last sequence update:	November 23, 2004
Last modified:	May 1, 2013
This is version 72 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)