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Q5Y0S2 (Q5Y0S2_9ALPH) Unreviewed, UniProtKB/TrEMBL

Last modified March 6, 2013. Version 52. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA polymerase RuleBase RU000442
EC=2.7.7.7 RuleBase RU000442
Gene names
Name:UL30 EMBL AAU88096.1
OrganismCercopithecine herpesvirus 2 EMBL AAU88096.1
Taxonomic identifier10317 [NCBI]
Taxonomic lineageViruses › dsDNA viruses, no RNA stage › Herpesvirales › Herpesviridae › Alphaherpesvirinae › Simplexvirus

Protein attributes

Sequence length1226 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). RuleBase RU000442

Sequence similarities

Belongs to the DNA polymerase type-B family. RuleBase RU000442

Sequences

Sequence LengthMass (Da)Tools
Q5Y0S2 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: 8B7E7B5A0BF908DA

FASTA1,226134,717
        10         20         30         40         50         60 
MGSVGHGGPA AGSAARAAAG FFGPPAGRGS APPPRPRENF YNPYLAAERR SAAAGRGAQP 

        70         80         90        100        110        120 
APHSYCSDCD EFRFVAPRVL DEDAAPEMRV GVHDGRLRRA PRVYCGGEER DVLDFDRDAF 

       130        140        150        160        170        180 
WPRRTRLWAG VDRAPAGATP AVDLFHVYDI VENVEHAQHG GGAWRAHGRF LDAITPSGTV 

       190        200        210        220        230        240 
ITLLGLTPDG RRVAVHVYGT RQYFYMNRAE VDRRLGCRAP RDLCERMAAA LRESPGGSFR 

       250        260        270        280        290        300 
NVSADHFEVD VVDRADVYYY ETPRVPYYRV YARNGRALAY LCDNFCPEIR KYEGGVDATT 

       310        320        330        340        350        360 
RFVLDNPGFV TFGWYRLGRG RDGAPPHPRP TAAFVTSSDV EIDCTADNLT VERGRGDLPG 

       370        380        390        400        410        420 
YKLMCFDIEC KAGGEDEAAF PVAANAEDLV IQISCLLYDL AAARLEHILL FSLGSCDLPE 

       430        440        450        460        470        480 
AFVQDLGARG LPAPTVLEFD SEFEMLLAFV TFVKQYGPEF ATGYNIINFD WPFLIAKLTD 

       490        500        510        520        530        540 
VYKVPLDGYG RMNRRGVFRV WDIGQSHFQK RSKIKMNGVV NIDMYGIVCD KVKLSSYKLN 

       550        560        570        580        590        600 
AVAEAVLKDK KKDLSYRDIP RYYAAGPAQR GVIGEYCVQD SLLVGQLFFK FLPHLELSAV 

       610        620        630        640        650        660 
ARLAGITLTR TIYDGQQIRV YTCLLRLAGQ KGFLLPDNRG RFRAAAGDDG GGGPEDATAG 

       670        680        690        700        710        720 
GGGEDGDDAD GAAALAREGS GGRHVGYQGA KVLDPTSGFH VDPVVVFDFA SLYPSIIQAH 

       730        740        750        760        770        780 
NLCFSTLSLG ADAVAGLEPG RDYLDIEVGG RRLFFVKAHV RESLLSILLR DWLAMRKEIR 

       790        800        810        820        830        840 
SRIPQSTPEE AVLLDKQQAA IKVVCNSVYG FTGVQHGLLP CLHVAATVTT IGRDMLLATR 

       850        860        870        880        890        900 
EYVHARWATF ERLRADFPEA AAMRAPGPYS MRIIYGDTDS IFVLSRGLTA EGLTAMGDRM 

       910        920        930        940        950        960 
AAHISRALFL PPIKLECEKT FTKLLLIAKK KYIGVVCGGK MLIKGVDLVR KNNCAFINRT 

       970        980        990       1000       1010       1020 
SRALVDLLFY DDAVSAAAAA LAARPPEEWL AHPLPAGLDA FGRVLVDAHR RITDPDRDVR 

      1030       1040       1050       1060       1070       1080 
DFVLTSELSR HPRAYANKRL PHLTVYYKLL ARRDQVPSIK DRIPYVIVAQ TREVEETVAR 

      1090       1100       1110       1120       1130       1140 
IDALRELDAA PAAPPAPEPP PPPTGAPAPP KRPRGQQPGD PEPKRRRLLI SELAEDPGHA 

      1150       1160       1170       1180       1190       1200 
VAHGVPLNTD YYFSHLIGAA CVTFKALFGN NAKITENLLK RFIPEVWHPE EETAVRLRSA 

      1210       1220 
GFRAAGAGVT EAETRQRLRT AFDTLA

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References

[1]"Complete genome sequence of cercopithecine herpesvirus 2 (SA8) and comparison with other simplexviruses."
Tyler S.D., Peters G.A., Severini A.
Virology 331:429-440(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AY714813 Genomic DNA. Translation: AAU88096.1.
RefSeqYP_164473.1. NC_006560.1.

3D structure databases

ProteinModelPortalQ5Y0S2.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

GeneID3190304.

Phylogenomic databases

ProtClustDBCLSP2511265.

Family and domain databases

Gene3D3.90.1600.10. 2 hits.
InterProIPR006172. DNA-dir_DNA_pol_B.
IPR017964. DNA-dir_DNA_pol_B_CS.
IPR006133. DNA-dir_DNA_pol_B_exonuc.
IPR006134. DNA-dir_DNA_pol_B_multi_dom.
IPR023211. DNA_pol_palm_dom.
IPR021639. DNAPolymera_Pol_C.
IPR012337. RNaseH-like_dom.
[Graphical view]
PfamPF00136. DNA_pol_B. 1 hit.
PF03104. DNA_pol_B_exo1. 1 hit.
PF11590. DNAPolymera_Pol. 1 hit.
[Graphical view]
PRINTSPR00106. DNAPOLB.
SMARTSM00486. POLBc. 1 hit.
[Graphical view]
SUPFAMSSF53098. RNaseH_fold. 1 hit.
PROSITEPS00116. DNA_POLYMERASE_B. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameQ5Y0S2_9ALPH
AccessionPrimary (citable) accession number: Q5Y0S2
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: March 6, 2013
This is version 52 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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