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Q5XJ92

- Q5XJ92_DANRE

UniProt

Q5XJ92 - Q5XJ92_DANRE

Protein
Submitted name:

Peroxisome biogenesis factor 10

Gene

pex10

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 80 (01 Oct 2014)
      Sequence version 1 (23 Nov 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    GO - Biological processi

    1. protein import into peroxisome matrix Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Peroxisome biogenesis factor 10Imported
    Submitted name:
    Uncharacterized proteinImported
    Gene namesi
    Name:pex10Imported
    OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
    Taxonomic identifieri7955 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
    ProteomesiUP000000437: Chromosome 8

    Organism-specific databases

    ZFINiZDB-GENE-041010-71. pex10.

    Subcellular locationi

    GO - Cellular componenti

    1. integral component of peroxisomal membrane Source: InterPro

    Interactioni

    Protein-protein interaction databases

    STRINGi7955.ENSDARP00000060852.

    Family & Domainsi

    Keywords - Domaini

    Zinc-fingerUniRule annotation

    Phylogenomic databases

    eggNOGiCOG5574.
    GeneTreeiENSGT00510000048446.
    HOGENOMiHOG000180194.
    HOVERGENiHBG053568.
    InParanoidiQ5XJ92.
    KOiK13346.
    OMAiATECGHL.
    OrthoDBiEOG7C8GHZ.
    TreeFamiTF326491.

    Family and domain databases

    Gene3Di3.30.40.10. 1 hit.
    InterProiIPR025654. PEX10.
    IPR006845. Pex_N.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    IPR017907. Znf_RING_CS.
    [Graphical view]
    PANTHERiPTHR23350. PTHR23350. 1 hit.
    PfamiPF04757. Pex2_Pex12. 1 hit.
    [Graphical view]
    SMARTiSM00184. RING. 1 hit.
    [Graphical view]
    PROSITEiPS00518. ZF_RING_1. 1 hit.
    PS50089. ZF_RING_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5XJ92-1 [UniParc]FASTAAdd to Basket

    « Hide

    MPLVPANQPQ LIRSCQKDEY YQNNLTNNAN ELFHTFAGSR RWLQWRKEIE    50
    LLSDLTYYIL TTLSGYQTLG EEYVSIIQVD PSKRRIPSRI RRTALICFHT 100
    FVPYLLDKVL ICVENELEAE APQNTRRTWN PLSHMRFWIQ RAVGLLTESQ 150
    RKSLIPLVFA LQQGITLLYR LHVALFYTTG AFYHIAKRAA GVRYLRVGNA 200
    SGDDPRISHS YRLLGGLSVL QLAITLTLQF NNLRQRQRAR HEWKQHRNLL 250
    PSHQVSQSSS RTSRCILCLE ERRNTTSTPC GHLFCWECIT EWCNTKNECP 300
    LCREKFQPHR LVYLRSYK 318
    Length:318
    Mass (Da):37,312
    Last modified:November 23, 2004 - v1
    Checksum:iDAA650DCEB90AE2F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU570796 Genomic DNA. No translation available.
    BC083412 mRNA. Translation: AAH83412.1.
    RefSeqiNP_001005994.1. NM_001005994.1.
    UniGeneiDr.91787.

    Genome annotation databases

    EnsembliENSDART00000060853; ENSDARP00000060852; ENSDARG00000041511.
    GeneIDi449821.
    KEGGidre:449821.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CU570796 Genomic DNA. No translation available.
    BC083412 mRNA. Translation: AAH83412.1 .
    RefSeqi NP_001005994.1. NM_001005994.1.
    UniGenei Dr.91787.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protein-protein interaction databases

    STRINGi 7955.ENSDARP00000060852.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSDART00000060853 ; ENSDARP00000060852 ; ENSDARG00000041511 .
    GeneIDi 449821.
    KEGGi dre:449821.

    Organism-specific databases

    CTDi 5192.
    ZFINi ZDB-GENE-041010-71. pex10.

    Phylogenomic databases

    eggNOGi COG5574.
    GeneTreei ENSGT00510000048446.
    HOGENOMi HOG000180194.
    HOVERGENi HBG053568.
    InParanoidi Q5XJ92.
    KOi K13346.
    OMAi ATECGHL.
    OrthoDBi EOG7C8GHZ.
    TreeFami TF326491.

    Miscellaneous databases

    NextBioi 20832893.
    PROi Q5XJ92.

    Family and domain databases

    Gene3Di 3.30.40.10. 1 hit.
    InterProi IPR025654. PEX10.
    IPR006845. Pex_N.
    IPR001841. Znf_RING.
    IPR013083. Znf_RING/FYVE/PHD.
    IPR017907. Znf_RING_CS.
    [Graphical view ]
    PANTHERi PTHR23350. PTHR23350. 1 hit.
    Pfami PF04757. Pex2_Pex12. 1 hit.
    [Graphical view ]
    SMARTi SM00184. RING. 1 hit.
    [Graphical view ]
    PROSITEi PS00518. ZF_RING_1. 1 hit.
    PS50089. ZF_RING_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. NIH - Zebrafish Gene Collection (ZGC) project
      Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Tissue: OvaryImported.
    2. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: TuebingenImported.
    3. "The zebrafish reference genome sequence and its relationship to the human genome."
      Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
      , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
      Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: TuebingenImported.

    Entry informationi

    Entry nameiQ5XJ92_DANRE
    AccessioniPrimary (citable) accession number: Q5XJ92
    Entry historyi
    Integrated into UniProtKB/TrEMBL: November 23, 2004
    Last sequence update: November 23, 2004
    Last modified: October 1, 2014
    This is version 80 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3