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Q5XJ92 (Q5XJ92_DANRE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 79. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length318 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Ontologies

Sequences

Sequence LengthMass (Da)Tools
Q5XJ92 [UniParc].

Last modified November 23, 2004. Version 1.
Checksum: DAA650DCEB90AE2F

FASTA31837,312
        10         20         30         40         50         60 
MPLVPANQPQ LIRSCQKDEY YQNNLTNNAN ELFHTFAGSR RWLQWRKEIE LLSDLTYYIL 

        70         80         90        100        110        120 
TTLSGYQTLG EEYVSIIQVD PSKRRIPSRI RRTALICFHT FVPYLLDKVL ICVENELEAE 

       130        140        150        160        170        180 
APQNTRRTWN PLSHMRFWIQ RAVGLLTESQ RKSLIPLVFA LQQGITLLYR LHVALFYTTG 

       190        200        210        220        230        240 
AFYHIAKRAA GVRYLRVGNA SGDDPRISHS YRLLGGLSVL QLAITLTLQF NNLRQRQRAR 

       250        260        270        280        290        300 
HEWKQHRNLL PSHQVSQSSS RTSRCILCLE ERRNTTSTPC GHLFCWECIT EWCNTKNECP 

       310 
LCREKFQPHR LVYLRSYK 

« Hide

References

« Hide 'large scale' references
[1]NIH - Zebrafish Gene Collection (ZGC) project
Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Tissue: Ovary EMBL AAH83412.1.
[2]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Tuebingen Ensembl ENSDARP00000060852.
[3]"The zebrafish reference genome sequence and its relationship to the human genome."
Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J. expand/collapse author list , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Tuebingen Ensembl ENSDARP00000060852.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CU570796 Genomic DNA. No translation available.
BC083412 mRNA. Translation: AAH83412.1.
RefSeqNP_001005994.1. NM_001005994.1.
UniGeneDr.91787.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protein-protein interaction databases

STRING7955.ENSDARP00000060852.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSDART00000060853; ENSDARP00000060852; ENSDARG00000041511.
GeneID449821.
KEGGdre:449821.

Organism-specific databases

CTD5192.
ZFINZDB-GENE-041010-71. pex10.

Phylogenomic databases

eggNOGCOG5574.
GeneTreeENSGT00510000048446.
HOGENOMHOG000180194.
HOVERGENHBG053568.
InParanoidQ5XJ92.
KOK13346.
OMAATECGHL.
OrthoDBEOG7C8GHZ.
TreeFamTF326491.

Family and domain databases

Gene3D3.30.40.10. 1 hit.
InterProIPR025654. PEX10.
IPR006845. Pex_N.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PANTHERPTHR23350. PTHR23350. 1 hit.
PfamPF04757. Pex2_Pex12. 1 hit.
[Graphical view]
SMARTSM00184. RING. 1 hit.
[Graphical view]
PROSITEPS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio20832893.
PROQ5XJ92.

Entry information

Entry nameQ5XJ92_DANRE
AccessionPrimary (citable) accession number: Q5XJ92
Entry history
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: May 14, 2014
This is version 79 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)