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Protein
Submitted name:

Peroxisome biogenesis factor 10

Gene

pex10

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. zinc ion binding Source: InterPro

GO - Biological processi

  1. protein import into peroxisome matrix Source: GO_Central
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Peroxisome biogenesis factor 10Imported
Submitted name:
Uncharacterized proteinImported
Gene namesi
Name:pex10Imported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio
ProteomesiUP000000437: Chromosome 8

Organism-specific databases

ZFINiZDB-GENE-041010-71. pex10.

Subcellular locationi

GO - Cellular componenti

  1. integral component of peroxisomal membrane Source: InterPro
  2. peroxisomal membrane Source: GO_Central
Complete GO annotation...

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000060852.

Family & Domainsi

Keywords - Domaini

Zinc-fingerUniRule annotation

Phylogenomic databases

eggNOGiCOG5574.
GeneTreeiENSGT00510000048446.
HOGENOMiHOG000180194.
HOVERGENiHBG053568.
KOiK13346.
OMAiNCTLCLE.
OrthoDBiEOG7C8GHZ.
TreeFamiTF326491.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR025654. PEX10.
IPR006845. Pex_N.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PANTHERiPTHR23350. PTHR23350. 1 hit.
PfamiPF04757. Pex2_Pex12. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5XJ92-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPLVPANQPQ LIRSCQKDEY YQNNLTNNAN ELFHTFAGSR RWLQWRKEIE
60 70 80 90 100
LLSDLTYYIL TTLSGYQTLG EEYVSIIQVD PSKRRIPSRI RRTALICFHT
110 120 130 140 150
FVPYLLDKVL ICVENELEAE APQNTRRTWN PLSHMRFWIQ RAVGLLTESQ
160 170 180 190 200
RKSLIPLVFA LQQGITLLYR LHVALFYTTG AFYHIAKRAA GVRYLRVGNA
210 220 230 240 250
SGDDPRISHS YRLLGGLSVL QLAITLTLQF NNLRQRQRAR HEWKQHRNLL
260 270 280 290 300
PSHQVSQSSS RTSRCILCLE ERRNTTSTPC GHLFCWECIT EWCNTKNECP
310
LCREKFQPHR LVYLRSYK
Length:318
Mass (Da):37,312
Last modified:November 23, 2004 - v1
Checksum:iDAA650DCEB90AE2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU570796 Genomic DNA. No translation available.
BC083412 mRNA. Translation: AAH83412.1.
RefSeqiNP_001005994.1. NM_001005994.1.
UniGeneiDr.91787.

Genome annotation databases

EnsembliENSDART00000060853; ENSDARP00000060852; ENSDARG00000041511.
GeneIDi449821.
KEGGidre:449821.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU570796 Genomic DNA. No translation available.
BC083412 mRNA. Translation: AAH83412.1.
RefSeqiNP_001005994.1. NM_001005994.1.
UniGeneiDr.91787.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000060852.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSDART00000060853; ENSDARP00000060852; ENSDARG00000041511.
GeneIDi449821.
KEGGidre:449821.

Organism-specific databases

CTDi5192.
ZFINiZDB-GENE-041010-71. pex10.

Phylogenomic databases

eggNOGiCOG5574.
GeneTreeiENSGT00510000048446.
HOGENOMiHOG000180194.
HOVERGENiHBG053568.
KOiK13346.
OMAiNCTLCLE.
OrthoDBiEOG7C8GHZ.
TreeFamiTF326491.

Miscellaneous databases

NextBioi20832893.
PROiQ5XJ92.

Family and domain databases

Gene3Di3.30.40.10. 1 hit.
InterProiIPR025654. PEX10.
IPR006845. Pex_N.
IPR001841. Znf_RING.
IPR013083. Znf_RING/FYVE/PHD.
IPR017907. Znf_RING_CS.
[Graphical view]
PANTHERiPTHR23350. PTHR23350. 1 hit.
PfamiPF04757. Pex2_Pex12. 1 hit.
[Graphical view]
SMARTiSM00184. RING. 1 hit.
[Graphical view]
PROSITEiPS00518. ZF_RING_1. 1 hit.
PS50089. ZF_RING_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: OvaryImported.
  2. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: TuebingenImported.
  3. "The zebrafish reference genome sequence and its relationship to the human genome."
    Howe K., Clark M.D., Torroja C.F., Torrance J., Berthelot C., Muffato M., Collins J.E., Humphray S., McLaren K., Matthews L., McLaren S., Sealy I., Caccamo M., Churcher C., Scott C., Barrett J.C., Koch R., Rauch G.J.
    , White S., Chow W., Kilian B., Quintais L.T., Guerra-Assuncao J.A., Zhou Y., Gu Y., Yen J., Vogel J.H., Eyre T., Redmond S., Banerjee R., Chi J., Fu B., Langley E., Maguire S.F., Laird G.K., Lloyd D., Kenyon E., Donaldson S., Sehra H., Almeida-King J., Loveland J., Trevanion S., Jones M., Quail M., Willey D., Hunt A., Burton J., Sims S., McLay K., Plumb B., Davis J., Clee C., Oliver K., Clark R., Riddle C., Eliott D., Threadgold G., Harden G., Ware D., Mortimer B., Kerry G., Heath P., Phillimore B., Tracey A., Corby N., Dunn M., Johnson C., Wood J., Clark S., Pelan S., Griffiths G., Smith M., Glithero R., Howden P., Barker N., Stevens C., Harley J., Holt K., Panagiotidis G., Lovell J., Beasley H., Henderson C., Gordon D., Auger K., Wright D., Collins J., Raisen C., Dyer L., Leung K., Robertson L., Ambridge K., Leongamornlert D., McGuire S., Gilderthorp R., Griffiths C., Manthravadi D., Nichol S., Barker G., Whitehead S., Kay M., Brown J., Murnane C., Gray E., Humphries M., Sycamore N., Barker D., Saunders D., Wallis J., Babbage A., Hammond S., Mashreghi-Mohammadi M., Barr L., Martin S., Wray P., Ellington A., Matthews N., Ellwood M., Woodmansey R., Clark G., Cooper J., Tromans A., Grafham D., Skuce C., Pandian R., Andrews R., Harrison E., Kimberley A., Garnett J., Fosker N., Hall R., Garner P., Kelly D., Bird C., Palmer S., Gehring I., Berger A., Dooley C.M., Ersan-Urun Z., Eser C., Geiger H., Geisler M., Karotki L., Kirn A., Konantz J., Konantz M., Oberlander M., Rudolph-Geiger S., Teucke M., Osoegawa K., Zhu B., Rapp A., Widaa S., Langford C., Yang F., Carter N.P., Harrow J., Ning Z., Herrero J., Searle S.M., Enright A., Geisler R., Plasterk R.H., Lee C., Westerfield M., de Jong P.J., Zon L.I., Postlethwait J.H., Nusslein-Volhard C., Hubbard T.J., Roest Crollius H., Rogers J., Stemple D.L.
    Nature 496:498-503(2013) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: TuebingenImported.

Entry informationi

Entry nameiQ5XJ92_DANRE
AccessioniPrimary (citable) accession number: Q5XJ92
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: March 4, 2015
This is version 84 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.