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Protein
Submitted name:

C1qc protein

Gene

c1qc

Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • complement activation, classical pathway Source: ZFIN
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
C1qc proteinImported
Submitted name:
Complement component 1, q subcomponent, C chainImported
Gene namesi
Name:c1qcImported
OrganismiDanio rerio (Zebrafish) (Brachydanio rerio)Imported
Taxonomic identifieri7955 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiOstariophysiCypriniformesCyprinidaeDanio

Organism-specific databases

ZFINiZDB-GENE-041010-51. c1qc.

Subcellular locationi

  • Secreted SAAS annotation

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

SecretedSAAS annotation

Interactioni

Protein-protein interaction databases

STRINGi7955.ENSDARP00000104915.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini81 – 214134C1qInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains C1q domain.SAAS annotation

Keywords - Domaini

CollagenSAAS annotation

Phylogenomic databases

eggNOGiENOG410IWVM. Eukaryota.
ENOG4111MQB. LUCA.
HOGENOMiHOG000085653.
HOVERGENiHBG108220.
KOiK03988.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiIPR001073. C1q_dom.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamiPF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
[Graphical view]
PRINTSiPR00007. COMPLEMNTC1Q.
SMARTiSM00110. C1Q. 1 hit.
[Graphical view]
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiPS50871. C1Q. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5XJ71-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPGLPGIPGF PGRDGRQGMK GEKGDLGIPI KPGDTVKKGE RGAFGLKGPP
60 70 80 90 100
GKRGPHGDPG IMGPPGPPGE PGEAGLVDVS GSQLQSAFSV FRHTRIPPDA
110 120 130 140 150
NKVIRFSKVI TNPQGHFSTD ESKFVCKIPG TYYFVFHASS HDKKLCVILV
160 170 180 190 200
HDDKNLVSFC DHTQRGSQQV SSGGLSLYLK ENEKVWLMTN ALNGMYATAD
210
RADSVFSGFL IHAH
Length:214
Mass (Da):22,891
Last modified:November 23, 2004 - v1
Checksum:i456C426D2FEA35CC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083434 mRNA. Translation: AAH83434.1.
BC163984 mRNA. Translation: AAI63984.1.
RefSeqiNP_001005976.1. NM_001005976.1.
UniGeneiDr.133193.

Genome annotation databases

GeneIDi449803.
KEGGidre:449803.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083434 mRNA. Translation: AAH83434.1.
BC163984 mRNA. Translation: AAI63984.1.
RefSeqiNP_001005976.1. NM_001005976.1.
UniGeneiDr.133193.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi7955.ENSDARP00000104915.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi449803.
KEGGidre:449803.

Organism-specific databases

CTDi714.
ZFINiZDB-GENE-041010-51. c1qc.

Phylogenomic databases

eggNOGiENOG410IWVM. Eukaryota.
ENOG4111MQB. LUCA.
HOGENOMiHOG000085653.
HOVERGENiHBG108220.
KOiK03988.

Family and domain databases

Gene3Di2.60.120.40. 1 hit.
InterProiIPR001073. C1q_dom.
IPR008160. Collagen.
IPR008983. Tumour_necrosis_fac-like_dom.
[Graphical view]
PfamiPF00386. C1q. 1 hit.
PF01391. Collagen. 1 hit.
[Graphical view]
PRINTSiPR00007. COMPLEMNTC1Q.
SMARTiSM00110. C1Q. 1 hit.
[Graphical view]
SUPFAMiSSF49842. SSF49842. 1 hit.
PROSITEiPS50871. C1Q. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (OCT-2004) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: LiverImported.
  2. NIH - Zebrafish Gene Collection (ZGC) project
    Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: PCR rescueImported.

Entry informationi

Entry nameiQ5XJ71_DANRE
AccessioniPrimary (citable) accession number: Q5XJ71
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: July 6, 2016
This is version 95 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.