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Protein

Coiled-coil domain-containing protein 65

Gene

Ccdc65

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in motile cilia function, possibly by acting on the assembly of the nexin-dynein regulatory complex.By similarity

Names & Taxonomyi

Protein namesi
Recommended name:
Coiled-coil domain-containing protein 65
Gene namesi
Name:Ccdc65
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 7

Organism-specific databases

RGDi1595842. Ccdc65.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 502502Coiled-coil domain-containing protein 65PRO_0000284781Add
BLAST

Proteomic databases

PaxDbiQ5XIJ8.
PRIDEiQ5XIJ8.

Expressioni

Gene expression databases

BgeeiENSRNOG00000031424.
GenevisibleiQ5XIJ8. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000050912.

Structurei

3D structure databases

ProteinModelPortaliQ5XIJ8.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili96 – 16065Sequence analysisAdd
BLAST
Coiled coili252 – 28534Sequence analysisAdd
BLAST

Sequence similaritiesi

Belongs to the CCDC65 family.

Keywords - Domaini

Coiled coil

Phylogenomic databases

eggNOGiENOG410IE4Y. Eukaryota.
ENOG410XQTS. LUCA.
GeneTreeiENSGT00730000111193.
HOGENOMiHOG000059628.
HOVERGENiHBG103693.
InParanoidiQ5XIJ8.
OMAiYIGMENF.
OrthoDBiEOG091G0BMS.
PhylomeDBiQ5XIJ8.
TreeFamiTF326074.

Sequencei

Sequence statusi: Complete.

Q5XIJ8-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPKKGKKPKL PLTDEEQLIL FQQKLLADEE AAKKKERLLT QFLKDKLAKE
60 70 80 90 100
EHNSSLNLNK INTQWRTVLR EVKTRELHKD IEILSQIFER VVDCKDSVIK
110 120 130 140 150
SLARDLTEAE EQYAHALRGH LHNVDQLLTL QRRRLSLLEE NYNMELEVLT
160 170 180 190 200
KEFETERKAI LDHHDKEIHY LHDVFMAMEQ NYVDSEYESK LEFQSMWDDL
210 220 230 240 250
KNKNLEEKHF LRLQLENVVE DLWRRFQDAL KNYTDATEDR KIAFETLKVK
260 270 280 290 300
DEKSSKEIEV QMKKIQRLQE AISALKGKIV AHSREGEWQN QCIRNDKELV
310 320 330 340 350
HVQLRKLKIQ RTQARTESQE NLVKLTLESN ATLKALKKVV EKGEKILKLA
360 370 380 390 400
EICRKFETEE EKVLPFYSSA LTPEEQEEVE IQSQEEITED LAKIMMDYLG
410 420 430 440 450
MENFWKRYNK VKLEVLSLQH RRLQLLDISS KLREMLKQYL DGISVSDEVL
460 470 480 490 500
SRLNPLFIVN HKSNLPQLPP SAAQPGGDRG PGGDRRLTYN VIEAAHIASH

IL
Length:502
Mass (Da):59,004
Last modified:November 23, 2004 - v1
Checksum:i0EF92278761B5026
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083683 mRNA. Translation: AAH83683.1.
RefSeqiNP_001014225.1. NM_001014203.1.
UniGeneiRn.34654.

Genome annotation databases

EnsembliENSRNOT00000090760; ENSRNOP00000071850; ENSRNOG00000058916.
GeneIDi362994.
KEGGirno:362994.
UCSCiRGD:1595842. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083683 mRNA. Translation: AAH83683.1.
RefSeqiNP_001014225.1. NM_001014203.1.
UniGeneiRn.34654.

3D structure databases

ProteinModelPortaliQ5XIJ8.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000050912.

Proteomic databases

PaxDbiQ5XIJ8.
PRIDEiQ5XIJ8.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000090760; ENSRNOP00000071850; ENSRNOG00000058916.
GeneIDi362994.
KEGGirno:362994.
UCSCiRGD:1595842. rat.

Organism-specific databases

CTDi85478.
RGDi1595842. Ccdc65.

Phylogenomic databases

eggNOGiENOG410IE4Y. Eukaryota.
ENOG410XQTS. LUCA.
GeneTreeiENSGT00730000111193.
HOGENOMiHOG000059628.
HOVERGENiHBG103693.
InParanoidiQ5XIJ8.
OMAiYIGMENF.
OrthoDBiEOG091G0BMS.
PhylomeDBiQ5XIJ8.
TreeFamiTF326074.

Miscellaneous databases

PROiQ5XIJ8.

Gene expression databases

BgeeiENSRNOG00000031424.
GenevisibleiQ5XIJ8. RN.

Family and domain databases

ProtoNetiSearch...

Entry informationi

Entry nameiCCD65_RAT
AccessioniPrimary (citable) accession number: Q5XIJ8
Entry historyi
Integrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: November 23, 2004
Last modified: September 7, 2016
This is version 71 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.