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Protein

Complement C1q tumor necrosis factor-related protein 1

Gene

C1qtnf1

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Recommended name:
Complement C1q tumor necrosis factor-related protein 1
Gene namesi
Name:C1qtnf1
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1359204 C1qtnf1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Secreted

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Signal peptidei1 – 25Sequence analysisAdd BLAST25
ChainiPRO_000032008226 – 281Complement C1q tumor necrosis factor-related protein 1Add BLAST256

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Glycosylationi93N-linked (GlcNAc...) asparagineSequence analysis1

Keywords - PTMi

Glycoprotein

Proteomic databases

PaxDbiQ5XIG2
PRIDEiQ5XIG2

Expressioni

Gene expression databases

BgeeiENSRNOG00000003259
ExpressionAtlasiQ5XIG2 baseline and differential
GenevisibleiQ5XIG2 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000004373

Structurei

3D structure databases

ProteinModelPortaliQ5XIG2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini99 – 140Collagen-likeAdd BLAST42
Domaini141 – 281C1qPROSITE-ProRule annotationAdd BLAST141

Keywords - Domaini

Collagen, Signal

Phylogenomic databases

eggNOGiENOG410IKX5 Eukaryota
ENOG410XQIM LUCA
GeneTreeiENSGT00900000140911
HOGENOMiHOG000101544
HOVERGENiHBG108220
InParanoidiQ5XIG2
PhylomeDBiQ5XIG2
TreeFamiTF329591

Family and domain databases

Gene3Di2.60.120.40, 1 hit
InterProiView protein in InterPro
IPR001073 C1q_dom
IPR008160 Collagen
IPR008983 Tumour_necrosis_fac-like_dom
PfamiView protein in Pfam
PF00386 C1q, 1 hit
PF01391 Collagen, 1 hit
PRINTSiPR00007 COMPLEMNTC1Q
SMARTiView protein in SMART
SM00110 C1Q, 1 hit
SUPFAMiSSF49842 SSF49842, 1 hit
PROSITEiView protein in PROSITE
PS50871 C1Q, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q5XIG2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGSRGQGFML GCCLLLAVTW GPVLSLVPRV QEEQQEWEET EELTSPLDHV
60 70 80 90 100
TRPEETHKRY SPSLREGLPT SRCYRCCDSN PPVYQTIPPP QINITILKGE
110 120 130 140 150
KGDRGDRGLQ GKYGKIGSTG PRGHIGPKGQ KGSMGAPGDH CKSQYAAFSV
160 170 180 190 200
GRKKALHSND YFQPVVFDTE FVNLYNHFNM FTGKFYCYVP GIYFFSLNVH
210 220 230 240 250
TWNQKETYLH IMKNEEEVVI LYAQVSDRSI MQSQSLMLEL REQDEVWVRL
260 270 280
FKGERENAIF SDEFDTYITF SGYLVKPASE P
Length:281
Mass (Da):32,042
Last modified:November 23, 2004 - v1
Checksum:iBDCEF78BA9FC1336
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083720 mRNA Translation: AAH83720.1
RefSeqiNP_001007676.1, NM_001007675.1
XP_006247863.1, XM_006247801.3
XP_006247864.1, XM_006247802.3
XP_017452836.1, XM_017597347.1
UniGeneiRn.53880

Genome annotation databases

EnsembliENSRNOT00000004373; ENSRNOP00000004373; ENSRNOG00000003259
GeneIDi303701
KEGGirno:303701
UCSCiRGD:1359204 rat

Similar proteinsi

Entry informationi

Entry nameiC1QT1_RAT
AccessioniPrimary (citable) accession number: Q5XIG2
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 26, 2008
Last sequence update: November 23, 2004
Last modified: May 23, 2018
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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