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Protein

Solute carrier family 25 member 34

Gene

Slc25a34

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Solute carrier family 25 member 34
Gene namesi
Name:Slc25a34
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Unplaced

Organism-specific databases

RGDi1359157. Slc25a34.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Transmembranei21 – 4121Helical; Name=1Sequence analysisAdd
BLAST
Transmembranei59 – 7921Helical; Name=2Sequence analysisAdd
BLAST
Transmembranei112 – 13423Helical; Name=3Sequence analysisAdd
BLAST
Transmembranei184 – 20522Helical; Name=4Sequence analysisAdd
BLAST
Transmembranei220 – 24021Helical; Name=5Sequence analysisAdd
BLAST
Transmembranei292 – 31524Helical; Name=6Sequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane, Mitochondrion, Mitochondrion inner membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 318318Solute carrier family 25 member 34PRO_0000291791Add
BLAST

Proteomic databases

PaxDbiQ5XIF9.
PRIDEiQ5XIF9.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022820.

Structurei

3D structure databases

ProteinModelPortaliQ5XIF9.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati18 – 11194Solcar 1Add
BLAST
Repeati115 – 20894Solcar 2Add
BLAST
Repeati218 – 30992Solcar 3Add
BLAST

Sequence similaritiesi

Contains 3 Solcar repeats.PROSITE-ProRule annotation

Keywords - Domaini

Repeat, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG0755. Eukaryota.
ENOG410XS37. LUCA.
HOGENOMiHOG000165141.
HOVERGENiHBG108440.
InParanoidiQ5XIF9.
KOiK15117.
OMAiRKGITTA.
OrthoDBiEOG793B7Z.
PhylomeDBiQ5XIF9.
TreeFamiTF324506.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiIPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
SUPFAMiSSF103506. SSF103506. 1 hit.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5XIF9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTLTQAQMAP ATDSREMVSP AVDLVLGASA CCLACVFTNP LEVVKTRLQL
60 70 80 90 100
QGELQAPGTY PRPYRGFVSS VTAVARADGL WGLQKGLAAG LLYQGLMNGV
110 120 130 140 150
RFYCYSLACQ AGLTQQPGGT VVAGAVAGAL GAFVGSPAYL VKTQLQAQTG
160 170 180 190 200
AAVAVGHQHQ HQGVLSALET IWRQQGMLGL WRGVGAAVPR VTVGSAAQLA
210 220 230 240 250
TFTSAKAWVQ DQQWFLEDSW LATLAGGMIS SIAVVAVMAP FDVVSTRLYN
260 270 280 290 300
QPVDRAGRGQ LYGGLTDCLV KTCQQEGPLA LYKGVGPAYL RLGPHTILSM
310
FFWDELRKLA LRAQHPGT
Length:318
Mass (Da):33,652
Last modified:June 26, 2007 - v2
Checksum:i4C493217FCCDB3F9
GO

Sequence cautioni

The sequence AAH83723.1 differs from that shown. Reason: Erroneous initiation. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083723 mRNA. Translation: AAH83723.1. Different initiation.
RefSeqiNP_001013958.2. NM_001013936.2.
UniGeneiRn.104973.
Rn.222539.

Genome annotation databases

GeneIDi298606.
KEGGirno:298606.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083723 mRNA. Translation: AAH83723.1. Different initiation.
RefSeqiNP_001013958.2. NM_001013936.2.
UniGeneiRn.104973.
Rn.222539.

3D structure databases

ProteinModelPortaliQ5XIF9.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022820.

Proteomic databases

PaxDbiQ5XIF9.
PRIDEiQ5XIF9.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi298606.
KEGGirno:298606.

Organism-specific databases

CTDi284723.
RGDi1359157. Slc25a34.

Phylogenomic databases

eggNOGiKOG0755. Eukaryota.
ENOG410XS37. LUCA.
HOGENOMiHOG000165141.
HOVERGENiHBG108440.
InParanoidiQ5XIF9.
KOiK15117.
OMAiRKGITTA.
OrthoDBiEOG793B7Z.
PhylomeDBiQ5XIF9.
TreeFamiTF324506.

Miscellaneous databases

PROiQ5XIF9.

Family and domain databases

Gene3Di1.50.40.10. 1 hit.
InterProiIPR018108. Mitochondrial_sb/sol_carrier.
IPR023395. Mt_carrier_dom.
[Graphical view]
PfamiPF00153. Mito_carr. 3 hits.
[Graphical view]
SUPFAMiSSF103506. SSF103506. 1 hit.
PROSITEiPS50920. SOLCAR. 3 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: Heart.

Entry informationi

Entry nameiS2534_RAT
AccessioniPrimary (citable) accession number: Q5XIF9
Entry historyi
Integrated into UniProtKB/Swiss-Prot: June 26, 2007
Last sequence update: June 26, 2007
Last modified: June 8, 2016
This is version 79 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.