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Protein

Protein YIPF5

Gene

Yipf5

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

Plays a role in transport between endoplasmic reticulum and Golgi.1 Publication

GO - Biological processi

Keywordsi

Biological processER-Golgi transport, Protein transport, Transport

Names & Taxonomyi

Protein namesi
Recommended name:
Protein YIPF5
Alternative name(s):
YIP1 family member 5
YPT-interacting protein 1 A
Gene namesi
Name:Yipf5
Synonyms:Yip1a
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 18

Organism-specific databases

RGDi1359165. Yipf5.

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Topological domaini1 – 124CytoplasmicBy similarityAdd BLAST124
Transmembranei125 – 145HelicalSequence analysisAdd BLAST21
Topological domaini146LumenalCurated1
Transmembranei147 – 167HelicalSequence analysisAdd BLAST21
Topological domaini168 – 173CytoplasmicCurated6
Transmembranei174 – 194HelicalSequence analysisAdd BLAST21
Topological domaini195 – 196LumenalCurated2
Transmembranei197 – 217HelicalSequence analysisAdd BLAST21
Topological domaini218 – 236CytoplasmicCuratedAdd BLAST19
Transmembranei237 – 257HelicalSequence analysisAdd BLAST21

Keywords - Cellular componenti

Cytoplasmic vesicle, Endoplasmic reticulum, Golgi apparatus, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002343321 – 257Protein YIPF5Add BLAST257

Proteomic databases

PRIDEiQ5XID0.

Expressioni

Gene expression databases

BgeeiENSRNOG00000014564.
ExpressionAtlasiQ5XID0. baseline and differential.
GenevisibleiQ5XID0. RN.

Interactioni

Subunit structurei

Interacts with the COPII coat components Sec23 (SEC23A and/or SEC23B) and Sec24 (SEC24A and/or SEC24B) (By similarity). Interacts with YIF1A (By similarity). May interact with RAB1A (By similarity). Interacts with YIPF3 and YIPF4 (By similarity).By similarity

Family & Domainsi

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni75 – 106Interaction with Sec23By similarityAdd BLAST32

Sequence similaritiesi

Belongs to the YIP1 family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

GeneTreeiENSGT00510000046817.
HOGENOMiHOG000037706.
HOVERGENiHBG055241.
InParanoidiQ5XID0.
KOiK20363.
OMAiFDNLNTD.

Family and domain databases

InterProiView protein in InterPro
IPR006977. Yip1.
PfamiView protein in Pfam
PF04893. Yip1. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5XID0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGFDNLNSG FYQTSYSIDE QSQQSYDYGG SGGPYSKQYA GCEYSQQGRF
60 70 80 90 100
VPPDMMQPQQ TYTGQIYQPT QAYPPPTPQT FYGDSFEEEP PLLEELGINF
110 120 130 140 150
DHIWQKTLTV LHPLRASDGS IMNETDLAGP VVFCLAFGAT LLLAGKIQFG
160 170 180 190 200
YVYGISAIGC LGMFCLLNLM SMTGVSFGCV ASVLGYCLLP MILLSSFAVV
210 220 230 240 250
FSLQGMVGIL LTATIIGWCS FSASKIFISA LAMDGQQLLV AYPCALLYGV

FALISVF
Length:257
Mass (Da):27,903
Last modified:November 23, 2004 - v1
Checksum:i70F867980D62DD38
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083754 mRNA. Translation: AAH83754.1.
RefSeqiNP_001014172.3. NM_001014150.3.
UniGeneiRn.7575.

Genome annotation databases

EnsembliENSRNOT00000020385; ENSRNOP00000020385; ENSRNOG00000014564.
GeneIDi361315.
KEGGirno:361315.
UCSCiRGD:1359165. rat.

Similar proteinsi

Entry informationi

Entry nameiYIPF5_RAT
AccessioniPrimary (citable) accession number: Q5XID0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 16, 2006
Last sequence update: November 23, 2004
Last modified: November 22, 2017
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families