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Protein

Calicin

Gene

Ccin

Organism
Rattus norvegicus (Rat)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Possible morphogenetic cytoskeletal element in spermiogenic differentiation.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDevelopmental protein
Biological processDifferentiation, Spermatogenesis

Names & Taxonomyi

Protein namesi
Recommended name:
Calicin
Gene namesi
Name:Ccin
OrganismiRattus norvegicus (Rat)
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 5

Organism-specific databases

RGDi1359369 Ccin

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Cytoskeleton

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002844331 – 588CalicinAdd BLAST588

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei149PhosphoserineCombined sources1

Keywords - PTMi

Phosphoprotein

Proteomic databases

PaxDbiQ5XI58
PRIDEiQ5XI58

PTM databases

iPTMnetiQ5XI58
PhosphoSitePlusiQ5XI58

Expressioni

Gene expression databases

BgeeiENSRNOG00000014831

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000019887

Structurei

3D structure databases

ProteinModelPortaliQ5XI58
SMRiQ5XI58
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini28 – 98BTBPROSITE-ProRule annotationAdd BLAST71
Domaini133 – 235BACKAdd BLAST103
Repeati280 – 327Kelch 1Add BLAST48
Repeati328 – 375Kelch 2Add BLAST48
Repeati377 – 423Kelch 3Add BLAST47
Repeati425 – 475Kelch 4Add BLAST51
Repeati476 – 525Kelch 5Add BLAST50
Repeati526 – 580Kelch 6Add BLAST55

Keywords - Domaini

Kelch repeat, Repeat

Phylogenomic databases

eggNOGiKOG4441 Eukaryota
ENOG410XNX8 LUCA
GeneTreeiENSGT00800000124141
HOGENOMiHOG000060293
HOVERGENiHBG003874
InParanoidiQ5XI58
OMAiRCPPVIF
OrthoDBiEOG091G03HW
PhylomeDBiQ5XI58
TreeFamiTF331981

Family and domain databases

Gene3Di2.120.10.80, 1 hit
InterProiView protein in InterPro
IPR011705 BACK
IPR000210 BTB/POZ_dom
IPR015915 Kelch-typ_b-propeller
IPR006652 Kelch_1
IPR011333 SKP1/BTB/POZ_sf
PfamiView protein in Pfam
PF07707 BACK, 1 hit
PF00651 BTB, 1 hit
PF01344 Kelch_1, 1 hit
SMARTiView protein in SMART
SM00875 BACK, 1 hit
SM00225 BTB, 1 hit
SM00612 Kelch, 3 hits
SUPFAMiSSF117281 SSF117281, 2 hits
SSF54695 SSF54695, 1 hit
PROSITEiView protein in PROSITE
PS50097 BTB, 1 hit

Sequencei

Sequence statusi: Complete.

Q5XI58-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKLEFTEKNY NSFVLQNLNK QRKRKEYWDM ALTVDHHVFF AHRNVLAAVS
60 70 80 90 100
PLVKSLVSSN DMKTTDELYI TIDPNYLSPA TVDQLLDYFY SGKVVISEQN
110 120 130 140 150
VEELLRGAQY FNTPRLRIHC NDFLIKSIRR VNCLRYLFLA ELFELKEVSD
160 170 180 190 200
LAYSGIRDNF HFWASPEGSM HFMRCPPVIF GRLLRDENLH VLNEDQALSA
210 220 230 240 250
LINWVYFRKE EREKYFKKFF NYINLNAVSN KTLMFASNKL TGLENNSAHA
260 270 280 290 300
TLIESVLMDR KQERPCSLLS YQRKGALLDS VVILGGQKAH GKFNDGVFAY
310 320 330 340 350
IIQENLWLKL SEMPYRAAAL SATAAGRYIY ISGGTTEQIS GLKTAWRYDM
360 370 380 390 400
DDNSWTKLPD LPIGLVFHTM VTCGGTVYSV GGSIAPRRYV SNIYRYDERK
410 420 430 440 450
EAWCLAGKMS IPMDGTAVIT KGDRNLYIVT GRCLVKGYIS RVGVVDCFDT
460 470 480 490 500
CTGEVVQCIT FPIEFNHRPL LSFHQDNILR VHSHRQSVEI NLQKIKANKS
510 520 530 540 550
TTSVPLLPNS CPLDVSHAIC SIGDSKVFVC GGVTTASDVQ TKDYTINPNA
560 570 580
YLLDQKIGEW KTLACPPEAL DCPACCLAKL PCKILQRI
Length:588
Mass (Da):66,765
Last modified:November 23, 2004 - v1
Checksum:iEE00F1D2341BFE49
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083832 mRNA Translation: AAH83832.1
RefSeqiNP_001005904.1, NM_001005904.1
UniGeneiRn.109532

Genome annotation databases

EnsembliENSRNOT00000019887; ENSRNOP00000019887; ENSRNOG00000014831
GeneIDi298392
KEGGirno:298392
UCSCiRGD:1359369 rat

Similar proteinsi

Entry informationi

Entry nameiCALI_RAT
AccessioniPrimary (citable) accession number: Q5XI58
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 17, 2007
Last sequence update: November 23, 2004
Last modified: May 23, 2018
This is version 98 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
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Main funding by: National Institutes of Health