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Protein
Submitted name:

Accs protein

Gene

Accs

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Accs proteinImported
Gene namesi
Name:AccsImported
Synonyms:RGD1309314_predictedImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1309314. Accs.

PTM / Processingi

Proteomic databases

PaxDbiQ5XI27.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000046777.

Structurei

3D structure databases

ProteinModelPortaliQ5XI27.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini124 – 490367Aminotran_1_2InterPro annotationAdd
BLAST

Phylogenomic databases

eggNOGiKOG0256. Eukaryota.
COG0436. LUCA.
HOGENOMiHOG000033689.
HOVERGENiHBG055243.
PhylomeDBiQ5XI27.
TreeFamiTF354218.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.

Sequencei

Sequence statusi: Fragment.

Q5XI27-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
LQTLWFRKTR AGPADHSVLV ASFGLIFCLP QKDSTVPTTC TGSASTQDME
60 70 80 90 100
SGYGDDLQGE CLRKPDQKQP KLYGVGDPTA TFSSDSFCLS SRGRVIKWFW
110 120 130 140 150
DSAEEGYRTY HMDEYDEDKN PSGIINLGTS ENKLCFDLLS WRLTQNDMLH
160 170 180 190 200
VEPSLLQYPD WRGHRFLRKE VARFLSFYCK SPAPLKPENV VVLNGCASLF
210 220 230 240 250
SALATVLCEP GEVLLIPTPY YGAITQHIYL YGNIRLAYVY LDSKVTGLNT
260 270 280 290 300
RPFQLTVEKL EMALQGVNSE GVKVKGLILI NPQNPLGDIY SPEELQDFLG
310 320 330 340 350
FAMRHKLHVI MDEVYMLSVF EESLGYRSVL SLERLPDPQR THVMWATSKD
360 370 380 390 400
FGMSGLRFGV LYTENQHVAT AVASLCRYHG LSGLVQHQMA QLLQDHDWIS
410 420 430 440 450
QVYLPENHAR LKAAHTYVSE ELRALGIPFV SRGAGFFIWV DLRKYLREGT
460 470 480 490 500
FEEEAMLWRR FLDNKVLLSS GKTFECKEPG WFRVVFSDKE NRLRLGMQRM
510 520
RQVLKGQSQM VEDASRCHTQ ELQ
Length:523
Mass (Da):59,636
Last modified:November 23, 2004 - v1
Checksum:iAB5FCB15FF753DCC
GO

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Non-terminal residuei1 – 11Imported

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083866 mRNA. Translation: AAH83866.1.
RefSeqiNP_001254463.1. NM_001267534.1.
UniGeneiRn.198632.

Genome annotation databases

GeneIDi311218.
KEGGirno:311218.
UCSCiRGD:1309314. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC083866 mRNA. Translation: AAH83866.1.
RefSeqiNP_001254463.1. NM_001267534.1.
UniGeneiRn.198632.

3D structure databases

ProteinModelPortaliQ5XI27.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000046777.

Proteomic databases

PaxDbiQ5XI27.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi311218.
KEGGirno:311218.
UCSCiRGD:1309314. rat.

Organism-specific databases

CTDi84680.
RGDi1309314. Accs.

Phylogenomic databases

eggNOGiKOG0256. Eukaryota.
COG0436. LUCA.
HOGENOMiHOG000033689.
HOVERGENiHBG055243.
PhylomeDBiQ5XI27.
TreeFamiTF354218.

Miscellaneous databases

NextBioi663225.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR004839. Aminotransferase_I/II.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00155. Aminotran_1_2. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: KidneyImported.

Entry informationi

Entry nameiQ5XI27_RAT
AccessioniPrimary (citable) accession number: Q5XI27
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: March 16, 2016
This is version 75 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.