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Protein

Ribulokinase

Gene

araB

Organism
Bacillus clausii (strain KSM-K16)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + L(or D)-ribulose = ADP + L(or D)-ribulose 5-phosphate.UniRule annotation

Pathwayi: L-arabinose degradation via L-ribulose

This protein is involved in step 2 of the subpathway that synthesizes D-xylulose 5-phosphate from L-arabinose (bacterial route).UniRule annotation
Proteins known to be involved in the 3 steps of the subpathway in this organism are:
  1. L-arabinose isomerase (araA)
  2. Ribulokinase (araB)
  3. no protein annotated in this organism
This subpathway is part of the pathway L-arabinose degradation via L-ribulose, which is itself part of Carbohydrate degradation.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes D-xylulose 5-phosphate from L-arabinose (bacterial route), the pathway L-arabinose degradation via L-ribulose and in Carbohydrate degradation.

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Kinase, Transferase

Keywords - Biological processi

Arabinose catabolism, Carbohydrate metabolism

Keywords - Ligandi

ATP-binding, Nucleotide-binding

Enzyme and pathway databases

UniPathwayiUPA00145; UER00566.

Names & Taxonomyi

Protein namesi
Recommended name:
RibulokinaseUniRule annotation (EC:2.7.1.16UniRule annotation)
Gene namesi
Name:araBUniRule annotation
Ordered Locus Names:ABC0407
OrganismiBacillus clausii (strain KSM-K16)
Taxonomic identifieri66692 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001168 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001983551 – 561RibulokinaseAdd BLAST561

Interactioni

Protein-protein interaction databases

STRINGi66692.ABC0407.

Structurei

3D structure databases

ProteinModelPortaliQ5WL06.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the ribulokinase family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108HMQ. Bacteria.
COG1069. LUCA.
HOGENOMiHOG000236884.
KOiK00853.
OMAiACTMLPI.
OrthoDBiPOG091H0HTZ.

Family and domain databases

CDDicd07781. FGGY_RBK. 1 hit.
HAMAPiMF_00520. Ribulokinase. 1 hit.
InterProiIPR000577. Carb_kinase_FGGY.
IPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. Ribulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000538. GlpK. 1 hit.
TIGRFAMsiTIGR01234. L-ribulokinase. 1 hit.

Sequencei

Sequence statusi: Complete.

Q5WL06-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKRYTIGIDY GTESGRAVLV DLENGAEVAE HVTPYAHGVI DQCLPDSGRS
60 70 80 90 100
LEPEWALQHP GDYLDVLRLS VPKVVEIADI SASQVIGIGI DFTACTMLPI
110 120 130 140 150
DKHGDPLCFD PQLAGRPHSW VKLWKHHAAQ DEADEINRIA EERKEAFLAR
160 170 180 190 200
YGGKYSSEWM VSKIWQIFNE DPDMFEKADA FLEATDWVVA QLTGTIVRNS
210 220 230 240 250
CTAGYKAMWH KRDGYPDDSF FAALDPGLAQ LTTTKLRGDI LAPGQRAGGL
260 270 280 290 300
TAEMAETLGL KPGTAVAVGN VDAHVAVPAA GVVTPGKMVM VMGTSICHLV
310 320 330 340 350
LAKEEREVEG MCGVVEDGIV PGYFGYEAGQ SAVGDIFAWL MKHGIPADLK
360 370 380 390 400
QEAEQAGKPL HSLLEEKAAA YRPGETGLLA LDWWNGNRST LVDANLTGLI
410 420 430 440 450
LGYTLQTKAE ELYRTLLEAT AFGTKKIIDA FRDSGVEVNV LYACGGLPQK
460 470 480 490 500
NELLMQIYAD VTNLEIKVAA SKQTPALGAA MYASVAAGDE AGGYETIFAA
510 520 530 540 550
AEKMAHTKAR SFKPNHENVR LYQALYEEYS KLHDYFGRGE NDVMKTLKQL
560
RSRAKGGAVH A
Length:561
Mass (Da):61,036
Last modified:November 23, 2004 - v1
Checksum:i0657B604ABEFF596
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006627 Genomic DNA. Translation: BAD62949.1.
RefSeqiWP_011245268.1. NC_006582.1.

Genome annotation databases

EnsemblBacteriaiBAD62949; BAD62949; ABC0407.
KEGGibcl:ABC0407.
PATRICi18920034. VBIBacCla58185_0422.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006627 Genomic DNA. Translation: BAD62949.1.
RefSeqiWP_011245268.1. NC_006582.1.

3D structure databases

ProteinModelPortaliQ5WL06.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi66692.ABC0407.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD62949; BAD62949; ABC0407.
KEGGibcl:ABC0407.
PATRICi18920034. VBIBacCla58185_0422.

Phylogenomic databases

eggNOGiENOG4108HMQ. Bacteria.
COG1069. LUCA.
HOGENOMiHOG000236884.
KOiK00853.
OMAiACTMLPI.
OrthoDBiPOG091H0HTZ.

Enzyme and pathway databases

UniPathwayiUPA00145; UER00566.

Family and domain databases

CDDicd07781. FGGY_RBK. 1 hit.
HAMAPiMF_00520. Ribulokinase. 1 hit.
InterProiIPR000577. Carb_kinase_FGGY.
IPR018485. Carb_kinase_FGGY_C.
IPR018484. Carb_kinase_FGGY_N.
IPR005929. Ribulokinase.
[Graphical view]
PfamiPF02782. FGGY_C. 1 hit.
PF00370. FGGY_N. 1 hit.
[Graphical view]
PIRSFiPIRSF000538. GlpK. 1 hit.
TIGRFAMsiTIGR01234. L-ribulokinase. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiARAB_BACSK
AccessioniPrimary (citable) accession number: Q5WL06
Entry historyi
Integrated into UniProtKB/Swiss-Prot: March 1, 2005
Last sequence update: November 23, 2004
Last modified: November 2, 2016
This is version 67 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.