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Protein

Probable D-serine dehydratase

Gene

dsdA

Organism
Bacillus clausii (strain KSM-K16)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

D-serine = pyruvate + NH3.UniRule annotation

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

Lyase

Keywords - Ligandi

Pyridoxal phosphate

Names & Taxonomyi

Protein namesi
Recommended name:
Probable D-serine dehydrataseUniRule annotation (EC:4.3.1.18UniRule annotation)
Alternative name(s):
D-serine deaminaseUniRule annotation
Short name:
DSDUniRule annotation
Gene namesi
Name:dsdAUniRule annotation
Ordered Locus Names:ABC1954
OrganismiBacillus clausii (strain KSM-K16)
Taxonomic identifieri66692 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
Proteomesi
  • UP000001168 Componenti: Chromosome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001856061 – 440Probable D-serine dehydrataseAdd BLAST440

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei120N6-(pyridoxal phosphate)lysineUniRule annotation1

Interactioni

Protein-protein interaction databases

STRINGi66692.ABC1954.

Structurei

3D structure databases

ProteinModelPortaliQ5WGL6.
SMRiQ5WGL6.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the serine/threonine dehydratase family. DsdA subfamily.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5WGL6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDIAGKNREQ WLAAYPLLQQ IVLTKEVWWA NPNRQPASEG LARLSLKEED
60 70 80 90 100
VKEAEQRLRR FAPYIASVFP ETKGAGGLIE SPLIDIPTMK HKLDQRFGQN
110 120 130 140 150
VPGRLLLKGD HALPISGSIK ARGGIYEVLK HAESLLVDQQ ILTKQDDYSL
160 170 180 190 200
IATDAVQSFF SSYAIVVGST GNLGLSIGII SAKLGFRVTV HMSDDAKQWK
210 220 230 240 250
KDMLREKGVR VVEHSADYSK AVEEGRKESD ADPNSYFIDD EHSIDLFVGY
260 270 280 290 300
AVAAFRLKEQ LQEKGIAVTK DQPLHVYLPC GVGGGPGGVA FGLKLVFGDA
310 320 330 340 350
VRCFFAEPTH SPCMLIGMLT GKHQHISVQD FGIDNQTAAD GLAVGRPSGF
360 370 380 390 400
VGRMMAPLLE GIYTIADPML YTLLADLADA EGLYLEPSAV AGLYGPVQLE
410 420 430 440
KRGLYTDAAT HLVWATGGSM VPKEIMETDY QLGVNLRTEQ
Length:440
Mass (Da):48,073
Last modified:November 23, 2004 - v1
Checksum:iA1B080C37A644C6F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006627 Genomic DNA. Translation: BAD64489.1.
RefSeqiWP_011246797.1. NC_006582.1.

Genome annotation databases

EnsemblBacteriaiBAD64489; BAD64489; ABC1954.
KEGGibcl:ABC1954.
PATRICi18923434. VBIBacCla58185_2080.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006627 Genomic DNA. Translation: BAD64489.1.
RefSeqiWP_011246797.1. NC_006582.1.

3D structure databases

ProteinModelPortaliQ5WGL6.
SMRiQ5WGL6.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi66692.ABC1954.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD64489; BAD64489; ABC1954.
KEGGibcl:ABC1954.
PATRICi18923434. VBIBacCla58185_2080.

Phylogenomic databases

eggNOGiENOG4105BZC. Bacteria.
COG3048. LUCA.
HOGENOMiHOG000218072.
KOiK01753.
OMAiESDPNCF.
OrthoDBiPOG091H0G2T.

Family and domain databases

HAMAPiMF_01030. D_Ser_dehydrat. 1 hit.
InterProiIPR011780. D_Ser_am_lyase.
IPR000634. Ser/Thr_deHydtase_PyrdxlP-BS.
IPR001926. TrpB-like_PLP-dep.
[Graphical view]
PANTHERiPTHR10314:SF9. PTHR10314:SF9. 3 hits.
PfamiPF00291. PALP. 1 hit.
[Graphical view]
SUPFAMiSSF53686. SSF53686. 1 hit.
TIGRFAMsiTIGR02035. D_Ser_am_lyase. 1 hit.
PROSITEiPS00165. DEHYDRATASE_SER_THR. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiSDHD_BACSK
AccessioniPrimary (citable) accession number: Q5WGL6
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 1, 2005
Last sequence update: November 23, 2004
Last modified: November 2, 2016
This is version 64 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.