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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ligB

Organism
Bacillus clausii (strain KSM-K16)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciBCLA66692:GHMP-2890-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligBImported
Ordered Locus Names:ABC2809Imported
OrganismiBacillus clausii (strain KSM-K16)Imported
Taxonomic identifieri66692 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000001168: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi66692.ABC2809.

Structurei

3D structure databases

ProteinModelPortaliQ5WE67.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
KOiK01971.
OMAiLYTRHNN.
OrthoDBiEOG6F2971.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5WE67-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MITIFISPML LNRIDTPTEN NWLTELKFDG IRLIMSKHDG LTRLYTRHKT
60 70 80 90 100
EVTNRFPELC NNDIADGTIL DGELIVLNDD GQPDFELVMS RFRSSKTTPL
110 120 130 140 150
LPVQFVVFDI IKHKHTCTTA LPLIQRKEIL SKVLRPHPHM TEIKWIEGQA
160 170 180 190 200
DAYFAAVKDR ELEGIVIKNP TSTYKINKRS DDWLKVINYQ YTQGLITGYR
210 220 230 240 250
KDEFGLLLES FEGESWGVME HMELKQRKQF YQIAKMQNVT EGKQFVHLET
260 270
PLPCRIRYRN LTRKGYLRIP TFVDWLI
Length:277
Mass (Da):32,489
Last modified:November 23, 2004 - v1
Checksum:i2C1A134D7FAFC8A3
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006627 Genomic DNA. Translation: BAD65343.1.
RefSeqiYP_176304.1. NC_006582.1.

Genome annotation databases

EnsemblBacteriaiBAD65343; BAD65343; ABC2809.
GeneIDi3204073.
KEGGibcl:ABC2809.
PATRICi18925282. VBIBacCla58185_2991.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP006627 Genomic DNA. Translation: BAD65343.1.
RefSeqiYP_176304.1. NC_006582.1.

3D structure databases

ProteinModelPortaliQ5WE67.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi66692.ABC2809.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAD65343; BAD65343; ABC2809.
GeneIDi3204073.
KEGGibcl:ABC2809.
PATRICi18925282. VBIBacCla58185_2991.

Phylogenomic databases

eggNOGiCOG1793.
HOGENOMiHOG000049932.
KOiK01971.
OMAiLYTRHNN.
OrthoDBiEOG6F2971.

Enzyme and pathway databases

BioCyciBCLA66692:GHMP-2890-MONOMER.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome sequence of the alkaliphilic Bacillus clausii KSM-K16."
    Takaki Y., Kageyama Y., Shimamura S., Suzuki H., Nishi S., Hatada Y., Kawai S., Ito S., Horikoshi K.
    Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: KSM-K16Imported.

Entry informationi

Entry nameiQ5WE67_BACSK
AccessioniPrimary (citable) accession number: Q5WE67
Entry historyi
Integrated into UniProtKB/TrEMBL: November 23, 2004
Last sequence update: November 23, 2004
Last modified: January 7, 2015
This is version 57 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.