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Q5WA72

- PDI15_ORYSJ

UniProt

Q5WA72 - PDI15_ORYSJ

Protein

Protein disulfide isomerase-like 1-5

Gene

PDIL1-5

Organism
Oryza sativa subsp. japonica (Rice)
Status
Reviewed - Annotation score: 3 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 72 (01 Oct 2014)
      Sequence version 1 (07 Dec 2004)
      Previous versions | rss
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    Functioni

    Acts as a protein-folding catalyst that interacts with nascent polypeptides to catalyze the formation, isomerization, and reduction or oxidation of disulfide bonds. May play a role in storage protein biogenesis By similarity.By similarity

    Catalytic activityi

    Catalyzes the rearrangement of -S-S- bonds in proteins.

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei97 – 971NucleophileBy similarity
    Active sitei436 – 4361NucleophileBy similarity
    Active sitei439 – 4391NucleophileBy similarity

    GO - Molecular functioni

    1. protein disulfide isomerase activity Source: UniProtKB-EC

    GO - Biological processi

    1. cell redox homeostasis Source: InterPro

    Keywords - Molecular functioni

    Isomerase

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Protein disulfide isomerase-like 1-5 (EC:5.3.4.1)
    Short name:
    OsPDIL1-5
    Alternative name(s):
    Protein disulfide isomerase-like 3-1
    Short name:
    OsPDIL3-1
    Gene namesi
    Name:PDIL1-5
    Synonyms:PDIL3-1
    Ordered Locus Names:Os06g0163400, LOC_Os06g06790
    ORF Names:P0681F10.44
    OrganismiOryza sativa subsp. japonica (Rice)
    Taxonomic identifieri39947 [NCBI]
    Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
    ProteomesiUP000000763: Chromosome 6

    Organism-specific databases

    GrameneiQ5WA72.

    Subcellular locationi

    GO - Cellular componenti

    1. endoplasmic reticulum lumen Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    Endoplasmic reticulum

    PTM / Processingi

    Molecule processing

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Signal peptidei1 – 2222Sequence AnalysisAdd
    BLAST
    Chaini23 – 533511Protein disulfide isomerase-like 1-5PRO_0000400032Add
    BLAST

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Glycosylationi151 – 1511N-linked (GlcNAc...)Sequence Analysis
    Disulfide bondi436 ↔ 439Redox-activePROSITE-ProRule annotation

    Keywords - PTMi

    Disulfide bond, Glycoprotein

    Structurei

    3D structure databases

    ProteinModelPortaliQ5WA72.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Domaini51 – 196146Thioredoxin 1PROSITE-ProRule annotationAdd
    BLAST
    Domaini387 – 516130Thioredoxin 2PROSITE-ProRule annotationAdd
    BLAST

    Motif

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Motifi530 – 5334Prevents secretion from ERPROSITE-ProRule annotation

    Sequence similaritiesi

    Belongs to the protein disulfide isomerase family.Curated
    Contains 2 thioredoxin domains.PROSITE-ProRule annotation

    Keywords - Domaini

    Redox-active center, Repeat, Signal

    Phylogenomic databases

    eggNOGiCOG0526.
    KOiK09580.
    OMAiPWCINCE.

    Family and domain databases

    Gene3Di3.40.30.10. 3 hits.
    InterProiIPR012336. Thioredoxin-like_fold.
    IPR013766. Thioredoxin_domain.
    [Graphical view]
    PfamiPF00085. Thioredoxin. 2 hits.
    [Graphical view]
    SUPFAMiSSF52833. SSF52833. 4 hits.
    PROSITEiPS00014. ER_TARGET. 1 hit.
    PS51352. THIOREDOXIN_2. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Sequence processingi: The displayed sequence is further processed into a mature form.

    Q5WA72-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRARRVVAAA AVLLLFAVVA VARLDLDDDG DDSEVLDELL AVDEEEERGE    50
    LGGGGEAAAA EAVRRAQSMV LVLDNDNARR AVEENAEVLL LGYAPWCERS 100
    AQLMPRFAEA AAALRAMGSA VAFAKLDGER YPKAASAVGV KGFPTVLLFV 150
    NGTEHQFTGL HTKDAIVTWV RKKTGAPASR IQSKDSAEEF LKKDQTFAVG 200
    LFKNFEGAEY EEFVKAATSE NEVQFVETND RNVAKILFPG IASEEQFLGL 250
    VKSEPEKFEK FNGAFEEKEI IQFVELNKFP LITVFTDLNS GKVYGSPIKL 300
    QVFTFAEAYD FEDLESMIQE VARGFKTKIM LIYVDTAEEK LAKPFLTLYG 350
    LEPEKPTVTA FDTSKGTKYL MEAEINAKNL QDFCLSLLEG TLPPYFRSEP 400
    VPEEKGPIEK VVGRTFDSSV LESPQNVFLE VHAPWCVDCE AISKNVEKLA 450
    KHFNDLGQTN LKFARIDASV NEHPKLQINN YPTLLLYPAQ DKSNPIKLSK 500
    KSNLKDMAKF VKEKLQIADV ETVAAGDIVK DEL 533
    Length:533
    Mass (Da):59,032
    Last modified:December 7, 2004 - v1
    Checksum:iF435D08CE96793B7
    GO

    Experimental Info

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Sequence conflicti208 – 2081A → T in AK073970. (PubMed:12869764)Curated

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB026295 Genomic DNA. Translation: BAD67648.1.
    AP008212 Genomic DNA. Translation: BAF18810.1.
    AK073970 mRNA. No translation available.
    RefSeqiNP_001056896.1. NM_001063431.1.
    UniGeneiOs.4371.

    Genome annotation databases

    EnsemblPlantsiOS06T0163400-01; OS06T0163400-01; OS06G0163400.
    GeneIDi4340223.
    KEGGiosa:4340223.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AB026295 Genomic DNA. Translation: BAD67648.1 .
    AP008212 Genomic DNA. Translation: BAF18810.1 .
    AK073970 mRNA. No translation available.
    RefSeqi NP_001056896.1. NM_001063431.1.
    UniGenei Os.4371.

    3D structure databases

    ProteinModelPortali Q5WA72.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblPlantsi OS06T0163400-01 ; OS06T0163400-01 ; OS06G0163400 .
    GeneIDi 4340223.
    KEGGi osa:4340223.

    Organism-specific databases

    Gramenei Q5WA72.

    Phylogenomic databases

    eggNOGi COG0526.
    KOi K09580.
    OMAi PWCINCE.

    Family and domain databases

    Gene3Di 3.40.30.10. 3 hits.
    InterProi IPR012336. Thioredoxin-like_fold.
    IPR013766. Thioredoxin_domain.
    [Graphical view ]
    Pfami PF00085. Thioredoxin. 2 hits.
    [Graphical view ]
    SUPFAMi SSF52833. SSF52833. 4 hits.
    PROSITEi PS00014. ER_TARGET. 1 hit.
    PS51352. THIOREDOXIN_2. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: cv. Nipponbare.
    2. "The rice annotation project database (RAP-DB): 2008 update."
      The rice annotation project (RAP)
      Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENOME REANNOTATION.
      Strain: cv. Nipponbare.
    3. "Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice."
      The rice full-length cDNA consortium
      Science 301:376-379(2003) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: cv. Nipponbare.
    4. "Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins."
      Houston N.L., Fan C., Xiang J.Q., Schulze J.M., Jung R., Boston R.S.
      Plant Physiol. 137:762-778(2005) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.
    5. "The protein disulfide isomerase gene family in bread wheat (T. aestivum L.)."
      d'Aloisio E., Paolacci A.R., Dhanapal A.P., Tanzarella O.A., Porceddu E., Ciaffi M.
      BMC Plant Biol. 10:101-101(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: GENE FAMILY, NOMENCLATURE.

    Entry informationi

    Entry nameiPDI15_ORYSJ
    AccessioniPrimary (citable) accession number: Q5WA72
    Entry historyi
    Integrated into UniProtKB/Swiss-Prot: November 2, 2010
    Last sequence update: December 7, 2004
    Last modified: October 1, 2014
    This is version 72 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiReviewed (UniProtKB/Swiss-Prot)
    Annotation programPlant Protein Annotation Program

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteome

    Documents

    1. Oryza sativa (rice)
      Index of Oryza sativa entries and their corresponding gene designations
    2. SIMILARITY comments
      Index of protein domains and families

    External Data

    Dasty 3