ID USPL1_HUMAN Reviewed; 1092 AA. AC Q5W0Q7; Q14109; Q6AI45; Q8IY30; Q8IYE8; DT 06-MAR-2007, integrated into UniProtKB/Swiss-Prot. DT 07-DEC-2004, sequence version 1. DT 27-MAR-2024, entry version 138. DE RecName: Full=SUMO-specific isopeptidase USPL1; DE EC=3.4.22.-; DE AltName: Full=Ubiquitin-specific peptidase-like protein 1; DE Short=USP-like 1; GN Name=USPL1; Synonyms=C13orf22, D13S106; OS Homo sapiens (Human). OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; OC Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; OC Homo. OX NCBI_TaxID=9606; RN [1] RP NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1). RC TISSUE=Melanoma; RA Wilton A.N., Zehavi-Feferman T., Fleming J., Baker E., Chen L.Z., RA Cooper D.W.; RT "A unique intronless gene or gene segment on chromosome 13 specifying a RT highly charged amino acid sequence."; RL Cytogenet. Cell Genet. 58:1985-1985(1991). RN [2] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2). RC TISSUE=Semen; RX PubMed=17974005; DOI=10.1186/1471-2164-8-399; RA Bechtel S., Rosenfelder H., Duda A., Schmidt C.P., Ernst U., RA Wellenreuther R., Mehrle A., Schuster C., Bahr A., Bloecker H., Heubner D., RA Hoerlein A., Michel G., Wedler H., Koehrer K., Ottenwaelder B., Poustka A., RA Wiemann S., Schupp I.; RT "The full-ORF clone resource of the German cDNA consortium."; RL BMC Genomics 8:399-399(2007). RN [3] RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. RX PubMed=15057823; DOI=10.1038/nature02379; RA Dunham A., Matthews L.H., Burton J., Ashurst J.L., Howe K.L., RA Ashcroft K.J., Beare D.M., Burford D.C., Hunt S.E., Griffiths-Jones S., RA Jones M.C., Keenan S.J., Oliver K., Scott C.E., Ainscough R., Almeida J.P., RA Ambrose K.D., Andrews D.T., Ashwell R.I.S., Babbage A.K., Bagguley C.L., RA Bailey J., Bannerjee R., Barlow K.F., Bates K., Beasley H., Bird C.P., RA Bray-Allen S., Brown A.J., Brown J.Y., Burrill W., Carder C., Carter N.P., RA Chapman J.C., Clamp M.E., Clark S.Y., Clarke G., Clee C.M., Clegg S.C., RA Cobley V., Collins J.E., Corby N., Coville G.J., Deloukas P., Dhami P., RA Dunham I., Dunn M., Earthrowl M.E., Ellington A.G., Faulkner L., RA Frankish A.G., Frankland J., French L., Garner P., Garnett J., RA Gilbert J.G.R., Gilson C.J., Ghori J., Grafham D.V., Gribble S.M., RA Griffiths C., Hall R.E., Hammond S., Harley J.L., Hart E.A., Heath P.D., RA Howden P.J., Huckle E.J., Hunt P.J., Hunt A.R., Johnson C., Johnson D., RA Kay M., Kimberley A.M., King A., Laird G.K., Langford C.J., Lawlor S., RA Leongamornlert D.A., Lloyd D.M., Lloyd C., Loveland J.E., Lovell J., RA Martin S., Mashreghi-Mohammadi M., McLaren S.J., McMurray A., Milne S., RA Moore M.J.F., Nickerson T., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., RA Phillimore B., Porter K.M., Rice C.M., Searle S., Sehra H.K., Shownkeen R., RA Skuce C.D., Smith M., Steward C.A., Sycamore N., Tester J., Thomas D.W., RA Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., RA Whitehead S.L., Willey D.L., Wilming L., Wray P.W., Wright M.W., Young L., RA Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Beck S., Bentley D.R., RA Rogers J., Ross M.T.; RT "The DNA sequence and analysis of human chromosome 13."; RL Nature 428:522-528(2004). RN [4] RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1), AND VARIANTS GLY-173; RP SER-531; ASN-950 AND SER-1043. RC TISSUE=Testis; RX PubMed=15489334; DOI=10.1101/gr.2596504; RG The MGC Project Team; RT "The status, quality, and expansion of the NIH full-length cDNA project: RT the Mammalian Gene Collection (MGC)."; RL Genome Res. 14:2121-2127(2004). RN [5] RP FUNCTION IN PROTEIN DESUMOYLATION, NON-CATALYTIC FUNCTION, CATALYTIC RP ACTIVITY, SUBCELLULAR LOCATION, AND MUTAGENESIS OF TRP-229; CYS-236; RP TRP-237; HIS-421; 340-LEU-LEU-341 AND 494-ILE-VAL-495. RX PubMed=22878415; DOI=10.1038/embor.2012.125; RA Schulz S., Chachami G., Kozaczkiewicz L., Winter U., Stankovic-Valentin N., RA Haas P., Hofmann K., Urlaub H., Ovaa H., Wittbrodt J., Meulmeester E., RA Melchior F.; RT "Ubiquitin-specific protease-like 1 (USPL1) is a SUMO isopeptidase with RT essential, non-catalytic functions."; RL EMBO Rep. 13:930-938(2012). RN [6] RP PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-909, AND IDENTIFICATION BY RP MASS SPECTROMETRY [LARGE SCALE ANALYSIS]. RC TISSUE=Cervix carcinoma, and Erythroleukemia; RX PubMed=23186163; DOI=10.1021/pr300630k; RA Zhou H., Di Palma S., Preisinger C., Peng M., Polat A.N., Heck A.J., RA Mohammed S.; RT "Toward a comprehensive characterization of a human cancer cell RT phosphoproteome."; RL J. Proteome Res. 12:260-271(2013). RN [7] RP FUNCTION IN RNAPII-MEDIATED SNRNA TRANSCRIPTION, SUBCELLULAR LOCATION, AND RP INTERACTION WITH ELL. RX PubMed=24413172; DOI=10.1242/jcs.141788; RA Hutten S., Chachami G., Winter U., Melchior F., Lamond A.I.; RT "A role for the Cajal-body-associated SUMO isopeptidase USPL1 in snRNA RT transcription mediated by RNA polymerase II."; RL J. Cell Sci. 127:1065-1078(2014). CC -!- FUNCTION: SUMO-specific isopeptidase involved in protein desumoylation. CC Specifically binds SUMO proteins with a higher affinity for SUMO2 and CC SUMO3 which it cleaves more efficiently. Also able to process full- CC length SUMO proteins to their mature forms (PubMed:22878415). Plays a CC key role in RNA polymerase-II-mediated snRNA transcription in the Cajal CC bodies (PubMed:24413172). Is a component of complexes that can bind to CC U snRNA genes (PubMed:24413172). {ECO:0000269|PubMed:22878415, CC ECO:0000269|PubMed:24413172}. CC -!- SUBUNIT: Interacts with ELL. {ECO:0000269|PubMed:24413172}. CC -!- INTERACTION: CC Q5W0Q7; P63165: SUMO1; NbExp=5; IntAct=EBI-2513899, EBI-80140; CC Q5W0Q7; P61956: SUMO2; NbExp=2; IntAct=EBI-2513899, EBI-473220; CC Q5W0Q7; P55854: SUMO3; NbExp=17; IntAct=EBI-2513899, EBI-474067; CC -!- SUBCELLULAR LOCATION: Nucleus, Cajal body {ECO:0000269|PubMed:22878415, CC ECO:0000269|PubMed:24413172}. CC -!- ALTERNATIVE PRODUCTS: CC Event=Alternative splicing; Named isoforms=2; CC Name=1; CC IsoId=Q5W0Q7-1; Sequence=Displayed; CC Name=2; CC IsoId=Q5W0Q7-2; Sequence=VSP_023479; CC -!- SIMILARITY: Belongs to the peptidase C19 family. {ECO:0000305}. CC --------------------------------------------------------------------------- CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms CC Distributed under the Creative Commons Attribution (CC BY 4.0) License CC --------------------------------------------------------------------------- DR EMBL; X59131; CAA41848.1; -; mRNA. DR EMBL; CR627370; CAH10469.1; -; mRNA. DR EMBL; AL138681; -; NOT_ANNOTATED_CDS; Genomic_DNA. DR EMBL; BC036027; AAH36027.1; -; mRNA. DR EMBL; BC038103; AAH38103.1; -; mRNA. DR CCDS; CCDS81760.1; -. [Q5W0Q7-2] DR CCDS; CCDS9336.1; -. [Q5W0Q7-1] DR PIR; I37273; I37273. DR RefSeq; NP_001308461.1; NM_001321532.1. DR RefSeq; NP_001308462.1; NM_001321533.1. [Q5W0Q7-2] DR RefSeq; NP_001308463.1; NM_001321534.1. [Q5W0Q7-2] DR RefSeq; NP_005791.3; NM_005800.4. [Q5W0Q7-1] DR RefSeq; XP_005266270.1; XM_005266213.3. DR PDB; 7P99; X-ray; 1.80 A; A=213-516. DR PDB; 7ZJU; X-ray; 2.17 A; A/C=218-502. DR PDB; 7ZJV; X-ray; 2.40 A; A=218-502. DR PDBsum; 7P99; -. DR PDBsum; 7ZJU; -. DR PDBsum; 7ZJV; -. DR AlphaFoldDB; Q5W0Q7; -. DR SMR; Q5W0Q7; -. DR BioGRID; 115503; 37. DR DIP; DIP-47278N; -. DR IntAct; Q5W0Q7; 22. DR MINT; Q5W0Q7; -. DR STRING; 9606.ENSP00000255304; -. DR MEROPS; C98.001; -. DR GlyGen; Q5W0Q7; 1 site, 1 O-linked glycan (1 site). DR iPTMnet; Q5W0Q7; -. DR PhosphoSitePlus; Q5W0Q7; -. DR BioMuta; USPL1; -. DR DMDM; 74747969; -. DR EPD; Q5W0Q7; -. DR jPOST; Q5W0Q7; -. DR MassIVE; Q5W0Q7; -. DR MaxQB; Q5W0Q7; -. DR PaxDb; 9606-ENSP00000255304; -. DR PeptideAtlas; Q5W0Q7; -. DR ProteomicsDB; 65772; -. [Q5W0Q7-1] DR ProteomicsDB; 65773; -. [Q5W0Q7-2] DR Antibodypedia; 22766; 22 antibodies from 10 providers. DR DNASU; 10208; -. DR Ensembl; ENST00000255304.9; ENSP00000255304.4; ENSG00000132952.12. [Q5W0Q7-1] DR Ensembl; ENST00000614860.1; ENSP00000480656.1; ENSG00000132952.12. [Q5W0Q7-2] DR GeneID; 10208; -. DR KEGG; hsa:10208; -. DR MANE-Select; ENST00000255304.9; ENSP00000255304.4; NM_005800.5; NP_005791.3. DR UCSC; uc001utc.3; human. [Q5W0Q7-1] DR AGR; HGNC:20294; -. DR CTD; 10208; -. DR DisGeNET; 10208; -. DR GeneCards; USPL1; -. DR HGNC; HGNC:20294; USPL1. DR HPA; ENSG00000132952; Low tissue specificity. DR MIM; 617470; gene. DR neXtProt; NX_Q5W0Q7; -. DR OpenTargets; ENSG00000132952; -. DR PharmGKB; PA134872379; -. DR VEuPathDB; HostDB:ENSG00000132952; -. DR eggNOG; ENOG502QRFM; Eukaryota. DR GeneTree; ENSGT00390000002316; -. DR HOGENOM; CLU_009764_0_0_1; -. DR InParanoid; Q5W0Q7; -. DR OMA; NANALCW; -. DR OrthoDB; 3740838at2759; -. DR PhylomeDB; Q5W0Q7; -. DR TreeFam; TF350670; -. DR BRENDA; 3.4.22.B70; 2681. DR PathwayCommons; Q5W0Q7; -. DR SignaLink; Q5W0Q7; -. DR BioGRID-ORCS; 10208; 773 hits in 1160 CRISPR screens. DR ChiTaRS; USPL1; human. DR GenomeRNAi; 10208; -. DR Pharos; Q5W0Q7; Tbio. DR PRO; PR:Q5W0Q7; -. DR Proteomes; UP000005640; Chromosome 13. DR RNAct; Q5W0Q7; Protein. DR Bgee; ENSG00000132952; Expressed in sperm and 200 other cell types or tissues. DR GO; GO:0015030; C:Cajal body; IDA:UniProtKB. DR GO; GO:0005615; C:extracellular space; HDA:UniProtKB. DR GO; GO:0016929; F:deSUMOylase activity; IDA:UniProtKB. DR GO; GO:0032183; F:SUMO binding; IDA:UniProtKB. DR GO; GO:0030576; P:Cajal body organization; IMP:UniProtKB. DR GO; GO:0008283; P:cell population proliferation; IMP:UniProtKB. DR GO; GO:0016926; P:protein desumoylation; IDA:UniProtKB. DR GO; GO:0006508; P:proteolysis; IEA:UniProtKB-KW. DR GO; GO:0009301; P:snRNA transcription; IMP:UniProtKB. DR InterPro; IPR029388; DUF4650. DR InterPro; IPR038765; Papain-like_cys_pep_sf. DR InterPro; IPR028890; Peptidase_C98. DR InterPro; IPR028889; USP_dom. DR InterPro; IPR033505; USPL1. DR PANTHER; PTHR15294; RETINOVIN-RELATED; 1. DR PANTHER; PTHR15294:SF3; SUMO-SPECIFIC ISOPEPTIDASE USPL1; 1. DR Pfam; PF15509; DUF4650; 1. DR Pfam; PF15499; Peptidase_C98; 1. DR SUPFAM; SSF54001; Cysteine proteinases; 1. DR PROSITE; PS50235; USP_3; 1. DR Genevisible; Q5W0Q7; HS. PE 1: Evidence at protein level; KW 3D-structure; Alternative splicing; Hydrolase; Nucleus; Phosphoprotein; KW Protease; Reference proteome; Thiol protease. FT CHAIN 1..1092 FT /note="SUMO-specific isopeptidase USPL1" FT /id="PRO_0000279526" FT DOMAIN 227..500 FT /note="USP" FT REGION 145..168 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 185..207 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 236..495 FT /note="SUMO-binding" FT REGION 713..749 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 797..859 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT REGION 904..930 FT /note="Disordered" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 145..167 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 189..207 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT COMPBIAS 907..929 FT /note="Polar residues" FT /evidence="ECO:0000256|SAM:MobiDB-lite" FT ACT_SITE 236 FT /note="Nucleophile" FT ACT_SITE 456 FT /note="Proton acceptor" FT /evidence="ECO:0000250" FT MOD_RES 909 FT /note="Phosphoserine" FT /evidence="ECO:0007744|PubMed:23186163" FT VAR_SEQ 1..329 FT /note="Missing (in isoform 2)" FT /evidence="ECO:0000303|PubMed:17974005" FT /id="VSP_023479" FT VARIANT 173 FT /note="E -> G (in dbSNP:rs17853512)" FT /evidence="ECO:0000269|PubMed:15489334" FT /id="VAR_030916" FT VARIANT 384 FT /note="P -> S (in dbSNP:rs3742303)" FT /id="VAR_030917" FT VARIANT 522 FT /note="A -> P (in dbSNP:rs17609459)" FT /id="VAR_030918" FT VARIANT 531 FT /note="L -> S (in dbSNP:rs7984952)" FT /evidence="ECO:0000269|PubMed:15489334" FT /id="VAR_030919" FT VARIANT 583 FT /note="I -> V (in dbSNP:rs41412648)" FT /id="VAR_051542" FT VARIANT 739 FT /note="S -> C (in dbSNP:rs9578190)" FT /id="VAR_030920" FT VARIANT 786 FT /note="L -> I (in dbSNP:rs35371042)" FT /id="VAR_051543" FT VARIANT 950 FT /note="S -> N (in dbSNP:rs3742302)" FT /evidence="ECO:0000269|PubMed:15489334" FT /id="VAR_030921" FT VARIANT 1043 FT /note="T -> S (in dbSNP:rs17857086)" FT /evidence="ECO:0000269|PubMed:15489334" FT /id="VAR_030922" FT MUTAGEN 229 FT /note="W->L: Altered SUMO-binding and SUMO-specific FT isopeptidase activity." FT /evidence="ECO:0000269|PubMed:22878415" FT MUTAGEN 236 FT /note="C->S: Abolishes the SUMO-specific isopeptidase FT activity." FT /evidence="ECO:0000269|PubMed:22878415" FT MUTAGEN 237 FT /note="W->F: Altered SUMO-binding and SUMO-specific FT isopeptidase activity." FT /evidence="ECO:0000269|PubMed:22878415" FT MUTAGEN 340..341 FT /note="LL->AA: Altered SUMO-binding and SUMO-specific FT isopeptidase activity." FT /evidence="ECO:0000269|PubMed:22878415" FT MUTAGEN 421 FT /note="H->A: Altered SUMO-binding and SUMO-specific FT isopeptidase activity." FT /evidence="ECO:0000269|PubMed:22878415" FT MUTAGEN 494..495 FT /note="IV->AA: Loss of SUMO-binding and catalytic FT activity." FT /evidence="ECO:0000269|PubMed:22878415" FT TURN 233..235 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 236..246 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 249..256 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 261..263 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 265..283 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 297..323 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 333..342 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 345..348 FT /evidence="ECO:0007829|PDB:7P99" FT TURN 349..351 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 353..360 FT /evidence="ECO:0007829|PDB:7P99" FT TURN 362..364 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 367..375 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 377..379 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 390..395 FT /evidence="ECO:0007829|PDB:7P99" FT TURN 398..400 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 403..413 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 416..422 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 431..434 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 436..438 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 441..452 FT /evidence="ECO:0007829|PDB:7P99" FT TURN 453..455 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 456..462 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 468..471 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 473..475 FT /evidence="ECO:0007829|PDB:7ZJU" FT STRAND 480..484 FT /evidence="ECO:0007829|PDB:7P99" FT HELIX 489..491 FT /evidence="ECO:0007829|PDB:7P99" FT STRAND 492..500 FT /evidence="ECO:0007829|PDB:7P99" SQ SEQUENCE 1092 AA; 120440 MW; FBE4626FC311E706 CRC64; MMDSPKIGNG LPVIGPGTDI GISSLHMVGY LGKNFDSAKV PSDEYCPACR EKGKLKALKT YRISFQESIF LCEDLQCIYP LGSKSLNNLI SPDLEECHTP HKPQKRKSLE SSYKDSLLLA NSKKTRNYIA IDGGKVLNSK HNGEVYDETS SNLPDSSGQQ NPIRTADSLE RNEILEADTV DMATTKDPAT VDVSGTGRPS PQNEGCTSKL EMPLESKCTS FPQALCVQWK NAYALCWLDC ILSALVHSEE LKNTVTGLCS KEESIFWRLL TKYNQANTLL YTSQLSGVKD GDCKKLTSEI FAEIETCLNE VRDEIFISLQ PQLRCTLGDM ESPVFAFPLL LKLETHIEKL FLYSFSWDFE CSQCGHQYQN RHMKSLVTFT NVIPEWHPLN AAHFGPCNNC NSKSQIRKMV LEKVSPIFML HFVEGLPQND LQHYAFHFEG CLYQITSVIQ YRANNHFITW ILDADGSWLE CDDLKGPCSE RHKKFEVPAS EIHIVIWERK ISQVTDKEAA CLPLKKTNDQ HALSNEKPVS LTSCSVGDAA SAETASVTHP KDISVAPRTL SQDTAVTHGD HLLSGPKGLV DNILPLTLEE TIQKTASVSQ LNSEAFLLEN KPVAENTGIL KTNTLLSQES LMASSVSAPC NEKLIQDQFV DISFPSQVVN TNMQSVQLNT EDTVNTKSVN NTDATGLIQG VKSVEIEKDA QLKQFLTPKT EQLKPERVTS QVSNLKKKET TADSQTTTSK SLQNQSLKEN QKKPFVGSWV KGLISRGASF MPLCVSAHNR NTITDLQPSV KGVNNFGGFK TKGINQKASH VSKKARKSAS KPPPISKPPA GPPSSNGTAA HPHAHAASEV LEKSGSTSCG AQLNHSSYGN GISSANHEDL VEGQIHKLRL KLRKKLKAEK KKLAALMSSP QSRTVRSENL EQVPQDGSPN DCESIEDLLN ELPYPIDIAS ESACTTVPGV SLYSSQTHEE ILAELLSPTP VSTELSENGE GDFRYLGMGD SHIPPPVPSE FNDVSQNTHL RQDHNYCSPT KKNPCEVQPD SLTNNACVRT LNLESPMKTD IFDEFFSSSA LNALANDTLD LPHFDEYLFE NY //