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Protein
Submitted name:

RNA binding motif protein 17, isoform CRA_a

Gene

RBM17

Organism
Homo sapiens (Human)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRNA-bindingSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
RNA binding motif protein 17, isoform CRA_aImported
Submitted name:
cDNA, FLJ95864Imported
Gene namesi
Name:RBM17Imported
ORF Names:hCG_24832Imported
OrganismiHomo sapiens (Human)Imported
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

Organism-specific databases

EuPathDBiHostDB:ENSG00000134453.15

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134860993

PTM / Processingi

Proteomic databases

PRIDEiQ5W009

Expressioni

Gene expression databases

BgeeiENSG00000134453
ExpressionAtlasiQ5W009 baseline and differential

Structurei

3D structure databases

SMRiQ5W009
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini235 – 275G-patchInterPro annotationAdd BLAST41

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili108 – 145Sequence analysisAdd BLAST38

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG1996 Eukaryota
ENOG410XWJ5 LUCA
HOVERGENiHBG059363
KOiK12840
OMAiAIPPPMY
OrthoDBiEOG091G0I8J

Family and domain databases

CDDicd12647 RRM_UHM_SPF45, 1 hit
Gene3Di3.30.70.330, 1 hit
InterProiView protein in InterPro
IPR000467 G_patch_dom
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
IPR003954 RRM_dom_euk
IPR034653 SPF45_RRM
IPR016967 Splicing_factor_SPF45
PfamiView protein in Pfam
PF01585 G-patch, 1 hit
PF00076 RRM_1, 1 hit
PIRSFiPIRSF031066 Splicing_factor_SPF45, 1 hit
SMARTiView protein in SMART
SM00443 G_patch, 1 hit
SM00361 RRM_1, 1 hit
SUPFAMiSSF54928 SSF54928, 1 hit
PROSITEiView protein in PROSITE
PS50174 G_PATCH, 1 hit

Sequencei

Sequence statusi: Complete.

Q5W009-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLYDDLGVE TSDSKTEGWS KNFKLLQSQL QVKKAALTQA KSQRTKQSTV
60 70 80 90 100
LAPVIDLKRG GSSDDRQIVD TPPHVAAGLK DPVPSGFSAG EVLIPLADEY
110 120 130 140 150
DPMFPNDYEK VVKRQREERQ RQRELERQKE IEEREKRRKD RHEASGFARR
160 170 180 190 200
PDPDSDEDED YERERRKRSM GGAAIAPPTS LVEKDKELPR DFPYEEDSRP
210 220 230 240 250
RSQSSKAAIP PPVYEEQDRP RSPTGPSNSF LANMGGTVAH KIMQKYGFRE
260 270 280 290 300
GQGLGKHEQG LSTALSVEKT SKRGGKIIVG DATEKDASKK SDSNPLTEIL
310 320 330 340 350
KCPTKVVLLR NMVGAGEVDE DLEVETKEEC EKYGKVGKCV IFEIPGAPDD
360 370 380 390 400
EAVRIFLEFE RVESAIKAVV DLNGRYFGGR VVKACFYNLD KFRVLDLAEQ

V
Length:401
Mass (Da):44,962
Last modified:May 10, 2005 - v1
Checksum:i99FA8C5E5E998554
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF542550 mRNA Translation: AAQ09533.1
AK314952 mRNA Translation: BAG37457.1
CH471072 Genomic DNA Translation: EAW86405.1
CH471072 Genomic DNA Translation: EAW86410.1
RefSeqiNP_001139019.1, NM_001145547.1
NP_116294.1, NM_032905.4
UniGeneiHs.498548

Genome annotation databases

GeneIDi84991
KEGGihsa:84991

Similar proteinsi

Entry informationi

Entry nameiQ5W009_HUMAN
AccessioniPrimary (citable) accession number: Q5W009
Entry historyiIntegrated into UniProtKB/TrEMBL: May 10, 2005
Last sequence update: May 10, 2005
Last modified: May 23, 2018
This is version 134 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

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