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Q5W009

- Q5W009_HUMAN

UniProt

Q5W009 - Q5W009_HUMAN

Protein
Submitted name:

RNA binding motif protein 17, isoform CRA_a

Gene

RBM17

Organism
Homo sapiens (Human)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 93 (01 Oct 2014)
      Sequence version 1 (10 May 2005)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    RNA binding motif protein 17, isoform CRA_aImported
    Submitted name:
    cDNA, FLJ95864Imported
    Gene namesi
    Name:RBM17Imported
    ORF Names:hCG_24832Imported
    OrganismiHomo sapiens (Human)Imported
    Taxonomic identifieri9606 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: HPA
    2. nucleus Source: HPA

    Pathology & Biotechi

    Organism-specific databases

    PharmGKBiPA134860993.

    Structurei

    3D structure databases

    SMRiQ5W009. Positions 301-401.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains G-patch domain.SAAS annotation

    Phylogenomic databases

    HOVERGENiHBG059363.
    KOiK12840.
    OMAiSDERQIV.
    PhylomeDBiQ5W009.

    Family and domain databases

    Gene3Di3.30.70.330. 1 hit.
    InterProiIPR000467. G_patch_dom.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR003954. RRM_dom_euk.
    IPR016967. Splicing_factor_SPF45.
    [Graphical view]
    PfamiPF01585. G-patch. 1 hit.
    [Graphical view]
    PIRSFiPIRSF031066. Splicing_factor_SPF45. 1 hit.
    SMARTiSM00443. G_patch. 1 hit.
    SM00361. RRM_1. 1 hit.
    [Graphical view]
    PROSITEiPS50174. G_PATCH. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5W009-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSLYDDLGVE TSDSKTEGWS KNFKLLQSQL QVKKAALTQA KSQRTKQSTV    50
    LAPVIDLKRG GSSDDRQIVD TPPHVAAGLK DPVPSGFSAG EVLIPLADEY 100
    DPMFPNDYEK VVKRQREERQ RQRELERQKE IEEREKRRKD RHEASGFARR 150
    PDPDSDEDED YERERRKRSM GGAAIAPPTS LVEKDKELPR DFPYEEDSRP 200
    RSQSSKAAIP PPVYEEQDRP RSPTGPSNSF LANMGGTVAH KIMQKYGFRE 250
    GQGLGKHEQG LSTALSVEKT SKRGGKIIVG DATEKDASKK SDSNPLTEIL 300
    KCPTKVVLLR NMVGAGEVDE DLEVETKEEC EKYGKVGKCV IFEIPGAPDD 350
    EAVRIFLEFE RVESAIKAVV DLNGRYFGGR VVKACFYNLD KFRVLDLAEQ 400
    V 401
    Length:401
    Mass (Da):44,962
    Last modified:May 10, 2005 - v1
    Checksum:i99FA8C5E5E998554
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF542550 mRNA. Translation: AAQ09533.1.
    AK314952 mRNA. Translation: BAG37457.1.
    CH471072 Genomic DNA. Translation: EAW86405.1.
    CH471072 Genomic DNA. Translation: EAW86410.1.
    RefSeqiNP_001139019.1. NM_001145547.1.
    NP_116294.1. NM_032905.4.
    UniGeneiHs.498548.

    Genome annotation databases

    GeneIDi84991.
    KEGGihsa:84991.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AF542550 mRNA. Translation: AAQ09533.1 .
    AK314952 mRNA. Translation: BAG37457.1 .
    CH471072 Genomic DNA. Translation: EAW86405.1 .
    CH471072 Genomic DNA. Translation: EAW86410.1 .
    RefSeqi NP_001139019.1. NM_001145547.1.
    NP_116294.1. NM_032905.4.
    UniGenei Hs.498548.

    3D structure databases

    SMRi Q5W009. Positions 301-401.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    DNASUi 84991.
    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 84991.
    KEGGi hsa:84991.

    Organism-specific databases

    CTDi 84991.
    PharmGKBi PA134860993.

    Phylogenomic databases

    HOVERGENi HBG059363.
    KOi K12840.
    OMAi SDERQIV.
    PhylomeDBi Q5W009.

    Miscellaneous databases

    GenomeRNAii 84991.
    NextBioi 75577.

    Family and domain databases

    Gene3Di 3.30.70.330. 1 hit.
    InterProi IPR000467. G_patch_dom.
    IPR012677. Nucleotide-bd_a/b_plait.
    IPR003954. RRM_dom_euk.
    IPR016967. Splicing_factor_SPF45.
    [Graphical view ]
    Pfami PF01585. G-patch. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF031066. Splicing_factor_SPF45. 1 hit.
    SMARTi SM00443. G_patch. 1 hit.
    SM00361. RRM_1. 1 hit.
    [Graphical view ]
    PROSITEi PS50174. G_PATCH. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The sequence of the human genome."
      Venter J.C., Adams M.D., Myers E.W., Li P.W., Mural R.J., Sutton G.G., Smith H.O., Yandell M., Evans C.A., Holt R.A., Gocayne J.D., Amanatides P., Ballew R.M., Huson D.H., Wortman J.R., Zhang Q., Kodira C.D., Zheng X.H.
      , Chen L., Skupski M., Subramanian G., Thomas P.D., Zhang J., Gabor Miklos G.L., Nelson C., Broder S., Clark A.G., Nadeau J., McKusick V.A., Zinder N., Levine A.J., Roberts R.J., Simon M., Slayman C., Hunkapiller M., Bolanos R., Delcher A., Dew I., Fasulo D., Flanigan M., Florea L., Halpern A., Hannenhalli S., Kravitz S., Levy S., Mobarry C., Reinert K., Remington K., Abu-Threideh J., Beasley E., Biddick K., Bonazzi V., Brandon R., Cargill M., Chandramouliswaran I., Charlab R., Chaturvedi K., Deng Z., Di Francesco V., Dunn P., Eilbeck K., Evangelista C., Gabrielian A.E., Gan W., Ge W., Gong F., Gu Z., Guan P., Heiman T.J., Higgins M.E., Ji R.R., Ke Z., Ketchum K.A., Lai Z., Lei Y., Li Z., Li J., Liang Y., Lin X., Lu F., Merkulov G.V., Milshina N., Moore H.M., Naik A.K., Narayan V.A., Neelam B., Nusskern D., Rusch D.B., Salzberg S., Shao W., Shue B., Sun J., Wang Z., Wang A., Wang X., Wang J., Wei M., Wides R., Xiao C., Yan C., Yao A., Ye J., Zhan M., Zhang W., Zhang H., Zhao Q., Zheng L., Zhong F., Zhong W., Zhu S., Zhao S., Gilbert D., Baumhueter S., Spier G., Carter C., Cravchik A., Woodage T., Ali F., An H., Awe A., Baldwin D., Baden H., Barnstead M., Barrow I., Beeson K., Busam D., Carver A., Center A., Cheng M.L., Curry L., Danaher S., Davenport L., Desilets R., Dietz S., Dodson K., Doup L., Ferriera S., Garg N., Gluecksmann A., Hart B., Haynes J., Haynes C., Heiner C., Hladun S., Hostin D., Houck J., Howland T., Ibegwam C., Johnson J., Kalush F., Kline L., Koduru S., Love A., Mann F., May D., McCawley S., McIntosh T., McMullen I., Moy M., Moy L., Murphy B., Nelson K., Pfannkoch C., Pratts E., Puri V., Qureshi H., Reardon M., Rodriguez R., Rogers Y.H., Romblad D., Ruhfel B., Scott R., Sitter C., Smallwood M., Stewart E., Strong R., Suh E., Thomas R., Tint N.N., Tse S., Vech C., Wang G., Wetter J., Williams S., Williams M., Windsor S., Winn-Deen E., Wolfe K., Zaveri J., Zaveri K., Abril J.F., Guigo R., Campbell M.J., Sjolander K.V., Karlak B., Kejariwal A., Mi H., Lazareva B., Hatton T., Narechania A., Diemer K., Muruganujan A., Guo N., Sato S., Bafna V., Istrail S., Lippert R., Schwartz R., Walenz B., Yooseph S., Allen D., Basu A., Baxendale J., Blick L., Caminha M., Carnes-Stine J., Caulk P., Chiang Y.H., Coyne M., Dahlke C., Mays A., Dombroski M., Donnelly M., Ely D., Esparham S., Fosler C., Gire H., Glanowski S., Glasser K., Glodek A., Gorokhov M., Graham K., Gropman B., Harris M., Heil J., Henderson S., Hoover J., Jennings D., Jordan C., Jordan J., Kasha J., Kagan L., Kraft C., Levitsky A., Lewis M., Liu X., Lopez J., Ma D., Majoros W., McDaniel J., Murphy S., Newman M., Nguyen T., Nguyen N., Nodell M., Pan S., Peck J., Peterson M., Rowe W., Sanders R., Scott J., Simpson M., Smith T., Sprague A., Stockwell T., Turner R., Venter E., Wang M., Wen M., Wu D., Wu M., Xia A., Zandieh A., Zhu X.
      Science 291:1304-1351(2001) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE.
    2. "Cloning and characterization of a novel human gene with G-patch Domain, prf:D111_DOMAIN,RNA recognition motif."
      Zhang D.L., Cai J.J., Ma D.L.
      Submitted (JUL-2002) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.
    3. Cited for: NUCLEOTIDE SEQUENCE.
    4. "NEDO functional analysis of protein and research application project."
      Wakamatsu A., Yamamoto J., Kimura K., Kaida T., Tsuchiya K., Iida Y., Takayama Y., Murakawa K., Kanehori K., Andoh T., Kagawa N., Sato R., Kawamura Y., Tanaka S., Kisu Y., Sugano S., Goshima N., Nomura N., Isogai T.
      Submitted (JAN-2008) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE.

    Entry informationi

    Entry nameiQ5W009_HUMAN
    AccessioniPrimary (citable) accession number: Q5W009
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 10, 2005
    Last sequence update: May 10, 2005
    Last modified: October 1, 2014
    This is version 93 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)
    DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.