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Protein

Muscular LMNA-interacting protein

Gene

MLIP

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Recommended name:
Muscular LMNA-interacting protein
Alternative name(s):
Muscular-enriched A-type laminin-interacting protein
Gene namesi
Name:MLIP
Synonyms:C6orf142
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 6

Organism-specific databases

HGNCiHGNC:21355. MLIP.

Subcellular locationi

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134918634.

Polymorphism and mutation databases

BioMutaiMLIP.
DMDMi296439407.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 458458Muscular LMNA-interacting proteinPRO_0000089538Add
BLAST

Proteomic databases

MaxQBiQ5VWP3.
PaxDbiQ5VWP3.
PRIDEiQ5VWP3.

PTM databases

PhosphoSiteiQ5VWP3.

Expressioni

Tissue specificityi

Primarily expressed in heart and skeletal muscle. Also detected in liver.1 Publication

Gene expression databases

BgeeiQ5VWP3.
CleanExiHS_C6orf142.
ExpressionAtlasiQ5VWP3. baseline and differential.
GenevisibleiQ5VWP3. HS.

Organism-specific databases

HPAiHPA046654.

Interactioni

Subunit structurei

Interacts with LMNA; may regulate MLIP localization to the nucleus envelope.1 Publication

Protein-protein interaction databases

BioGridi124729. 1 interaction.
IntActiQ5VWP3. 1 interaction.

Structurei

3D structure databases

ProteinModelPortaliQ5VWP3.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni1 – 4040Interaction with LMNAAdd
BLAST

Phylogenomic databases

eggNOGiNOG47342.
GeneTreeiENSGT00390000015862.
HOGENOMiHOG000169343.
HOVERGENiHBG105906.
InParanoidiQ5VWP3.
OMAiCPTFSLN.
OrthoDBiEOG7NCV2R.
PhylomeDBiQ5VWP3.
TreeFamiTF330818.

Family and domain databases

InterProiIPR029331. MLIP.
[Graphical view]
PANTHERiPTHR31514. PTHR31514. 1 hit.
PfamiPF15274. MLIP. 1 hit.
[Graphical view]

Sequences (4)i

Sequence statusi: Complete.

This entry describes 4 isoformsi produced by alternative splicing. AlignAdd to basket

Note: Additional isoforms seem to exist according to PubMed:21498514.

Isoform 1 (identifier: Q5VWP3-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MELEKREKRS LLNKNLEEKL TVSAGGSEAK PLIFTFVPTV RRLPTHTQLA
60 70 80 90 100
DTSKFLVKIP EESSDKSPET VNRSKSNDYL TLNAGSQQER DQAKLTCPSE
110 120 130 140 150
VSGTILQERE FEANKLQGMQ QSDLFKAEYV LIVDSEGEDE AASRKVEQGP
160 170 180 190 200
PGGIGTAAVR PKSLAISSSL VSDVVRPKTQ GTDLKTSSHP EMLHGMAPQQ
210 220 230 240 250
KHGQQYKTKS SYKAFAAIPT NTLLLEQKAL DEPAKTESVS KDNTLEPPVE
260 270 280 290 300
LYFPAQLRQQ TEELCATIDK VLQDSLSMHS SDSPSRSPKT LLGSDTVKTP
310 320 330 340 350
TTLPRAAGRE TKYANLSSPS STVSESQLTK PGVIRPVPVK SRILLKKEEE
360 370 380 390 400
VYEPNPFSKY LEDNSDLFSE QDVTVPPKPV SLHPLYQTKL YPPAKSLLHP
410 420 430 440 450
QTLSHADCLA PGPFSHLSFS LSDEQENSHT LLSHNACNKL SHPMVAIPEH

EALDSKEQ
Length:458
Mass (Da):50,429
Last modified:May 18, 2010 - v3
Checksum:i51B3A35106551BF7
GO
Isoform 2 (identifier: Q5VWP3-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-73: MELEKREKRS...SDKSPETVNR → MCSWYLGFECS
     205-298: Missing.
     372-439: Missing.

Note: No experimental confirmation available.
Show »
Length:234
Mass (Da):25,666
Checksum:iE92BF019C4B330AB
GO
Isoform 3 (identifier: Q5VWP3-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-21: MELEKREKRSLLNKNLEEKLT → MLSEQGLLSDCGNNYFQMTSCILSGSIQTTPQ
     204-204: Q → QLTSSPTTSE...STGPENKKSK

Note: No experimental confirmation available.
Show »
Length:993
Mass (Da):105,914
Checksum:iD58EE167D9D07B7C
GO
Isoform 4 (identifier: Q5VWP3-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     204-204: Q → QLTSSPTTSE...STGPENKKSK
     372-391: DVTVPPKPVSLHPLYQTKLY → AAHSVDSYCNGSDTSGPWLL
     392-458: Missing.

Note: No experimental confirmation available.
Show »
Length:915
Mass (Da):97,558
Checksum:iF3B8CED122E58C82
GO

Sequence cautioni

The sequence CAI13927.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti355 – 3551N → T in AAH09010 (PubMed:15489334).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti6 – 61R → H.
Corresponds to variant rs17625497 [ dbSNP | Ensembl ].
VAR_033676
Natural varianti159 – 1591V → I.2 Publications
Corresponds to variant rs4712056 [ dbSNP | Ensembl ].
VAR_023381
Natural varianti320 – 3201S → T.2 Publications
Corresponds to variant rs6934690 [ dbSNP | Ensembl ].
VAR_023382
Natural varianti376 – 3761P → S.
Corresponds to variant rs2275769 [ dbSNP | Ensembl ].
VAR_056800

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 7373MELEK…ETVNR → MCSWYLGFECS in isoform 2. 1 PublicationVSP_015320Add
BLAST
Alternative sequencei1 – 2121MELEK…EEKLT → MLSEQGLLSDCGNNYFQMTS CILSGSIQTTPQ in isoform 3. 1 PublicationVSP_041463Add
BLAST
Alternative sequencei204 – 2041Q → QLTSSPTTSEQLACKPPAFS FVSPTNPNTPPDPVNLEGAS VLEEFHTRRLDVGGAVVEES ATYFQTTAHSTPFSASKGTS STLLFPHSTQLSGSNLPSST AADPKPGLTSEVLKKTTLTS HVLSHGESPRTSSSPPSSSA SLKSNSASYIPVRIVTHSLS PSPKPFTSSFHGSSSTICSQ MSSSGNLSKSGVKSPVPSRL ALLTAILKSNPSHQRPFSPA SCPTFSLNSPASSTLTLDQK EKQTPPTPKKSLSSCSLRAG SPDQGELQVSELTQQSFHLP VFTKSTPLSQAPSLSPTKQA SSSLASMNVERTPSPTLKSN TMLSLLQTSTSSSVGLPPVP PSSSLSSLKSKQDGDLRGPE NPRNIHTYPSTLASSALSSL SPPINQRATFSSSEKCFHPS PALSSLINRSKRASSQLSGQ ELNPSALPSLPVSSADFASL PNLRSSSLPHANLPTLVPQL SPSALHPHCGSGTLPSRLGK SESTTPNHRSPVSTPSLPIS LTRTEELISPCALSMSTGPE NKKSK in isoform 3 and isoform 4. 1 PublicationVSP_041464
Alternative sequencei205 – 29894Missing in isoform 2. 1 PublicationVSP_015321Add
BLAST
Alternative sequencei372 – 43968Missing in isoform 2. 1 PublicationVSP_015322Add
BLAST
Alternative sequencei372 – 39120DVTVP…QTKLY → AAHSVDSYCNGSDTSGPWLL in isoform 4. CuratedVSP_055202Add
BLAST
Alternative sequencei392 – 45867Missing in isoform 4. CuratedVSP_055203Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK055530 mRNA. Translation: BAB70942.1.
AK294890 mRNA. Translation: BAH11916.1.
AL365328, AL139389, AL359380 Genomic DNA. Translation: CAH73017.1.
AL139389, AL359380, AL365328 Genomic DNA. Translation: CAI13927.1. Sequence problems.
AL359380, AL139389, AL365328 Genomic DNA. Translation: CAI16270.1.
BC009010 mRNA. Translation: AAH09010.1.
AL033384 Genomic DNA. No translation available.
CCDSiCCDS4954.1. [Q5VWP3-1]
CCDS64448.1. [Q5VWP3-4]
CCDS64449.1. [Q5VWP3-3]
RefSeqiNP_001268675.1. NM_001281746.1. [Q5VWP3-4]
NP_001268676.1. NM_001281747.1. [Q5VWP3-3]
NP_612636.2. NM_138569.2. [Q5VWP3-1]
UniGeneiHs.449276.
Hs.591803.

Genome annotation databases

EnsembliENST00000274897; ENSP00000274897; ENSG00000146147. [Q5VWP3-1]
ENST00000370876; ENSP00000359913; ENSG00000146147. [Q5VWP3-2]
ENST00000502396; ENSP00000426290; ENSG00000146147. [Q5VWP3-3]
ENST00000514921; ENSP00000425142; ENSG00000146147. [Q5VWP3-4]
GeneIDi90523.
KEGGihsa:90523.
UCSCiuc003pcg.4. human. [Q5VWP3-1]
uc003pch.4. human. [Q5VWP3-2]
uc011dxa.2. human. [Q5VWP3-3]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK055530 mRNA. Translation: BAB70942.1.
AK294890 mRNA. Translation: BAH11916.1.
AL365328, AL139389, AL359380 Genomic DNA. Translation: CAH73017.1.
AL139389, AL359380, AL365328 Genomic DNA. Translation: CAI13927.1. Sequence problems.
AL359380, AL139389, AL365328 Genomic DNA. Translation: CAI16270.1.
BC009010 mRNA. Translation: AAH09010.1.
AL033384 Genomic DNA. No translation available.
CCDSiCCDS4954.1. [Q5VWP3-1]
CCDS64448.1. [Q5VWP3-4]
CCDS64449.1. [Q5VWP3-3]
RefSeqiNP_001268675.1. NM_001281746.1. [Q5VWP3-4]
NP_001268676.1. NM_001281747.1. [Q5VWP3-3]
NP_612636.2. NM_138569.2. [Q5VWP3-1]
UniGeneiHs.449276.
Hs.591803.

3D structure databases

ProteinModelPortaliQ5VWP3.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi124729. 1 interaction.
IntActiQ5VWP3. 1 interaction.

PTM databases

PhosphoSiteiQ5VWP3.

Polymorphism and mutation databases

BioMutaiMLIP.
DMDMi296439407.

Proteomic databases

MaxQBiQ5VWP3.
PaxDbiQ5VWP3.
PRIDEiQ5VWP3.

Protocols and materials databases

DNASUi90523.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000274897; ENSP00000274897; ENSG00000146147. [Q5VWP3-1]
ENST00000370876; ENSP00000359913; ENSG00000146147. [Q5VWP3-2]
ENST00000502396; ENSP00000426290; ENSG00000146147. [Q5VWP3-3]
ENST00000514921; ENSP00000425142; ENSG00000146147. [Q5VWP3-4]
GeneIDi90523.
KEGGihsa:90523.
UCSCiuc003pcg.4. human. [Q5VWP3-1]
uc003pch.4. human. [Q5VWP3-2]
uc011dxa.2. human. [Q5VWP3-3]

Organism-specific databases

CTDi90523.
GeneCardsiGC06P053796.
H-InvDBHIX0022507.
HGNCiHGNC:21355. MLIP.
HPAiHPA046654.
MIMi614106. gene.
neXtProtiNX_Q5VWP3.
PharmGKBiPA134918634.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG47342.
GeneTreeiENSGT00390000015862.
HOGENOMiHOG000169343.
HOVERGENiHBG105906.
InParanoidiQ5VWP3.
OMAiCPTFSLN.
OrthoDBiEOG7NCV2R.
PhylomeDBiQ5VWP3.
TreeFamiTF330818.

Miscellaneous databases

ChiTaRSiMLIP. human.
GeneWikiiC6orf142.
GenomeRNAii90523.
NextBioi35494137.
PROiQ5VWP3.
SOURCEiSearch...

Gene expression databases

BgeeiQ5VWP3.
CleanExiHS_C6orf142.
ExpressionAtlasiQ5VWP3. baseline and differential.
GenevisibleiQ5VWP3. HS.

Family and domain databases

InterProiIPR029331. MLIP.
[Graphical view]
PANTHERiPTHR31514. PTHR31514. 1 hit.
PfamiPF15274. MLIP. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3), VARIANTS ILE-159 AND THR-320.
    Tissue: Brain and Heart.
  2. "The DNA sequence and analysis of human chromosome 6."
    Mungall A.J., Palmer S.A., Sims S.K., Edwards C.A., Ashurst J.L., Wilming L., Jones M.C., Horton R., Hunt S.E., Scott C.E., Gilbert J.G.R., Clamp M.E., Bethel G., Milne S., Ainscough R., Almeida J.P., Ambrose K.D., Andrews T.D.
    , Ashwell R.I.S., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Barker D.J., Barlow K.F., Bates K., Beare D.M., Beasley H., Beasley O., Bird C.P., Blakey S.E., Bray-Allen S., Brook J., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Carder C., Carter N.P., Chapman J.C., Clark S.Y., Clark G., Clee C.M., Clegg S., Cobley V., Collier R.E., Collins J.E., Colman L.K., Corby N.R., Coville G.J., Culley K.M., Dhami P., Davies J., Dunn M., Earthrowl M.E., Ellington A.E., Evans K.A., Faulkner L., Francis M.D., Frankish A., Frankland J., French L., Garner P., Garnett J., Ghori M.J., Gilby L.M., Gillson C.J., Glithero R.J., Grafham D.V., Grant M., Gribble S., Griffiths C., Griffiths M.N.D., Hall R., Halls K.S., Hammond S., Harley J.L., Hart E.A., Heath P.D., Heathcott R., Holmes S.J., Howden P.J., Howe K.L., Howell G.R., Huckle E., Humphray S.J., Humphries M.D., Hunt A.R., Johnson C.M., Joy A.A., Kay M., Keenan S.J., Kimberley A.M., King A., Laird G.K., Langford C., Lawlor S., Leongamornlert D.A., Leversha M., Lloyd C.R., Lloyd D.M., Loveland J.E., Lovell J., Martin S., Mashreghi-Mohammadi M., Maslen G.L., Matthews L., McCann O.T., McLaren S.J., McLay K., McMurray A., Moore M.J.F., Mullikin J.C., Niblett D., Nickerson T., Novik K.L., Oliver K., Overton-Larty E.K., Parker A., Patel R., Pearce A.V., Peck A.I., Phillimore B.J.C.T., Phillips S., Plumb R.W., Porter K.M., Ramsey Y., Ranby S.A., Rice C.M., Ross M.T., Searle S.M., Sehra H.K., Sheridan E., Skuce C.D., Smith S., Smith M., Spraggon L., Squares S.L., Steward C.A., Sycamore N., Tamlyn-Hall G., Tester J., Theaker A.J., Thomas D.W., Thorpe A., Tracey A., Tromans A., Tubby B., Wall M., Wallis J.M., West A.P., White S.S., Whitehead S.L., Whittaker H., Wild A., Willey D.J., Wilmer T.E., Wood J.M., Wray P.W., Wyatt J.C., Young L., Younger R.M., Bentley D.R., Coulson A., Durbin R.M., Hubbard T., Sulston J.E., Dunham I., Rogers J., Beck S.
    Nature 425:805-811(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2), VARIANTS ILE-159 AND THR-320.
    Tissue: Brain.
  4. "Identification of a novel muscle enriched A-type Lamin interacting protein (MLIP)."
    Ahmady E., Deeke S.A., Rabaa S., Kouri L., Kenney L., Stewart A.F., Burgon P.G.
    J. Biol. Chem. 286:19702-19713(2011) [PubMed] [Europe PMC] [Abstract]
    Cited for: INTERACTION WITH LMNA, TISSUE SPECIFICITY.

Entry informationi

Entry nameiMLIP_HUMAN
AccessioniPrimary (citable) accession number: Q5VWP3
Secondary accession number(s): B7Z2N0
, D6RE05, Q96H08, Q96NF7
Entry historyi
Integrated into UniProtKB/Swiss-Prot: August 30, 2005
Last sequence update: May 18, 2010
Last modified: June 24, 2015
This is version 84 of the entry and version 3 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 6
    Human chromosome 6: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.