Q5VWN6 (F208B_HUMAN) Reviewed, UniProtKB/Swiss-Prot
Last modified
January 25, 2012.
Version 60.
History...
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize order
Names·Attributes·General annotation·Ontologies·Alt products·Sequence annotation·Sequences·References·Cross-refs·Entry info·DocumentsCustomize orderNames and origin
| Protein names | Recommended name: Protein FAM208B | ||||
| Gene names |
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| Organism | Homo sapiens (Human) | ||||
| Taxonomic identifier | 9606 [NCBI] | ||||
| Taxonomic lineage | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Primates › Haplorrhini › Catarrhini › Hominidae › Homo |
Protein attributes
| Sequence length | 2430 AA. |
| Sequence status | Complete. |
| Protein existence | Evidence at protein level |
General annotation (Comments)
| Sequence similarities | Belongs to the FAM208 family. |
| Sequence caution | The sequence BAA91115.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAB14336.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAB14993.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. The sequence BAC87251.1 differs from that shown. Reason: Erroneous initiation. Translation N-terminally extended. |
Ontologies
| Keywords | |
|---|---|
| Coding sequence diversity | Alternative splicing Polymorphism |
| PTM | Phosphoprotein |
| Technical term | Complete proteome Reference proteome |
| Gene Ontology (GO) | |
| None. [Check GOA] | |
Alternative products
| This entry describes 2 isoforms produced by alternative splicing. [Align] [Select] | ||||||
| Isoform 1 (identifier: Q5VWN6-1) This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. | ||||||
| Isoform 2 (identifier: Q5VWN6-2) The sequence of this isoform differs from the canonical sequence as follows: 333-1137: Missing. |
Sequence annotation (Features)
| Feature key | Position(s) | Length | Description | Graphical view | Feature identifier | ||||
Molecule processing | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Chain | 1 – 2430 | 2430 | Protein FAM208B | PRO_0000299542 | |||||
Amino acid modifications | |||||||||
| Modified residue | 384 | 1 | Phosphoserine Ref.7 | ||||||
| Modified residue | 444 | 1 | Phosphoserine Ref.5 | ||||||
| Modified residue | 685 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1087 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1172 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1268 | 1 | Phosphoserine Ref.6 | ||||||
| Modified residue | 1541 | 1 | Phosphoserine Ref.8 | ||||||
| Modified residue | 2011 | 1 | Phosphothreonine Ref.8 | ||||||
Natural variations | |||||||||
| Alternative sequence | 333 – 1137 | 805 | Missing in isoform 2. | VSP_027733 | |||||
| Natural variant | 499 | 1 | C → G. Corresponds to variant rs2254067 [ dbSNP | Ensembl ]. | VAR_050848 | |||||
| Natural variant | 630 | 1 | A → D. Corresponds to variant rs4748636 [ dbSNP | Ensembl ]. | VAR_050849 | |||||
| Natural variant | 724 | 1 | S → Y. Corresponds to variant rs56856085 [ dbSNP | Ensembl ]. | VAR_061601 | |||||
| Natural variant | 807 | 1 | I → V. Corresponds to variant rs45575338 [ dbSNP | Ensembl ]. | VAR_061602 | |||||
| Natural variant | 1075 | 1 | R → P. Ref.2 Corresponds to variant rs2797491 [ dbSNP | Ensembl ]. | VAR_034838 | |||||
| Natural variant | 1206 | 1 | V → M. Corresponds to variant rs3814196 [ dbSNP | Ensembl ]. | VAR_050850 | |||||
| Natural variant | 1578 | 1 | P → S. Corresponds to variant rs17143175 [ dbSNP | Ensembl ]. | VAR_050851 | |||||
| Natural variant | 1679 | 1 | V → A. Ref.2 Ref.3 Ref.4 Corresponds to variant rs2669142 [ dbSNP | Ensembl ]. | VAR_034839 | |||||
| Natural variant | 1782 | 1 | T → I. Corresponds to variant rs11593253 [ dbSNP | Ensembl ]. | VAR_050852 | |||||
| Natural variant | 2288 | 1 | K → R. Corresponds to variant rs2275774 [ dbSNP | Ensembl ]. | VAR_050853 | |||||
| Natural variant | 2404 | 1 | S → N. Ref.2 Ref.3 Ref.4 Corresponds to variant rs2797501 [ dbSNP | Ensembl ]. | VAR_034840 | |||||
Experimental info | |||||||||
| Sequence conflict | 1885 | 1 | W → R in BAA91115. Ref.3 | ||||||
| Sequence conflict | 2043 | 1 | V → A in BAA91115. Ref.3 | ||||||
| Sequence conflict | 2065 | 1 | S → I in BAA91115. Ref.3 | ||||||
| Sequence conflict | 2359 | 1 | Q → R in BAB14993. Ref.3 | ||||||
| Sequence conflict | 2384 | 1 | A → T in BAB14993. Ref.3 | ||||||
Sequences
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References
| [1] | "The DNA sequence and comparative analysis of human chromosome 10." Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J. Rogers J.Nature 429:375-381(2004) [PubMed: 15164054] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. |
| [2] | "The nucleotide sequence of a long cDNA clone isolated from human." Nagase T., Kikuno R., Ohara O. Submitted (NOV-2002) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 259-2430 (ISOFORM 2), VARIANTS PRO-1075; ALA-1679 AND ASN-2404. Tissue: Brain. |
| [3] | "Complete sequencing and characterization of 21,243 full-length human cDNAs." Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S. Sugano S.Nat. Genet. 36:40-45(2004) [PubMed: 14702039] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 701-2430, VARIANTS ALA-1679 AND ASN-2404. Tissue: Testis. |
| [4] | "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 1662-2430, VARIANTS ALA-1679 AND ASN-2404. Tissue: Blood and Eye. |
| [5] | "Global, in vivo, and site-specific phosphorylation dynamics in signaling networks." Olsen J.V., Blagoev B., Gnad F., Macek B., Kumar C., Mortensen P., Mann M. Cell 127:635-648(2006) [PubMed: 17081983] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-444, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [6] | "Evaluation of the low-specificity protease elastase for large-scale phosphoproteome analysis." Wang B., Malik R., Nigg E.A., Korner R. Anal. Chem. 80:9526-9533(2008) [PubMed: 19007248] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-685; SER-1087; SER-1172 AND SER-1268, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [7] | "A quantitative atlas of mitotic phosphorylation." Dephoure N., Zhou C., Villen J., Beausoleil S.A., Bakalarski C.E., Elledge S.J., Gygi S.P. Proc. Natl. Acad. Sci. U.S.A. 105:10762-10767(2008) [PubMed: 18669648] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-384, MASS SPECTROMETRY. Tissue: Cervix carcinoma. |
| [8] | "Lys-N and trypsin cover complementary parts of the phosphoproteome in a refined SCX-based approach." Gauci S., Helbig A.O., Slijper M., Krijgsveld J., Heck A.J., Mohammed S. Anal. Chem. 81:4493-4501(2009) [PubMed: 19413330] [Abstract] Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1541 AND THR-2011, MASS SPECTROMETRY. Tissue: Embryonic kidney. |
| + | Additional computationally mapped references. |
Cross-references
Sequence databases | |
|---|---|
| EMBL GenBank DDBJ | AL365356, AL596094 Genomic DNA. Translation: CAH72616.1. AL365356, AL596094 Genomic DNA. Translation: CAH72617.1. AL596094, AL365356 Genomic DNA. Translation: CAI13368.1. AL596094, AL365356 Genomic DNA. Translation: CAI13367.1. AB095927 mRNA. Translation: BAC23103.1. AK000367 mRNA. Translation: BAA91115.1. Different initiation. AK022966 mRNA. Translation: BAB14336.1. Different initiation. AK024762 mRNA. Translation: BAB14993.1. Different initiation. AK027014 mRNA. Translation: BAB15627.1. AK128051 mRNA. Translation: BAC87251.1. Different initiation. BC001759 mRNA. Translation: AAH01759.2. BC110339 mRNA. Translation: AAI10340.1. |
| IPI | IPI00479893. IPI00848276. |
| RefSeq | NP_060252.4. NM_017782.4. |
| UniGene | Hs.432548. Hs.610717. |
3D structure databases | |
| ProteinModelPortal | Q5VWN6. |
| ModBase | Search... |
Protein-protein interaction databases | |
| IntAct | Q5VWN6. 5 interactions. |
| MINT | MINT-7032141. |
PTM databases | |
| PhosphoSite | Q5VWN6. |
Polymorphism databases | |
| DMDM | 74747424. |
Proteomic databases | |
| PRIDE | Q5VWN6. |
Protocols and materials databases | |
| StructuralBiologyKnowledgebase | Search... |
Genome annotation databases | |
| Ensembl | ENST00000328090; ENSP00000328426; ENSG00000108021. ENST00000380270; ENSP00000369623; ENSG00000108021. |
| GeneID | 54906. |
| KEGG | hsa:54906. |
| UCSC | uc001iij.2. human. |
Organism-specific databases | |
| CTD | 54906. |
| GeneCards | GC10P005726. |
| HGNC | HGNC:23484. FAM208B. |
| HPA | HPA038042. HPA038043. |
| neXtProt | NX_Q5VWN6. |
| HUGE | Search... |
| GenAtlas | Search... |
Phylogenomic databases | |
| HOVERGEN | HBG095571. |
| InParanoid | Q5VWN6. |
| OMA | NTLDLEY. |
| OrthoDB | EOG4FTVZN. |
Gene expression databases | |
| ArrayExpress | Q5VWN6. |
| Bgee | Q5VWN6. |
| CleanEx | HS_C10orf18. |
| Genevestigator | Q5VWN6. |
Family and domain databases | |
| InterPro | IPR022168. DUF3699. IPR022188. DUF3715. [Graphical view] |
| Pfam | PF12480. DUF3699. 2 hits. PF12509. DUF3715. 2 hits. [Graphical view] |
| ProtoNet | Search... |
Other | |
| NextBio | 57950. |
Entry information
| Entry name | F208B_HUMAN | ||||||||
| Accession | Primary (citable) accession number: Q5VWN6 Secondary accession number(s): Q2YD91 Q9NXA1 | ||||||||
| Entry history |
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| Entry status | Reviewed (UniProtKB/Swiss-Prot) | ||||||||
| Annotation program | Chordata Protein Annotation Program | ||||||||
| Disclaimer | Any medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care. | ||||||||
Relevant documents
| Human chromosome 10 Human chromosome 10: entries, gene names and cross-references to MIM |
| Human entries with polymorphisms or disease mutations List of human entries with polymorphisms or disease mutations |
| Human polymorphisms and disease mutations Index of human polymorphisms and disease mutations |
| SIMILARITY comments Index of protein domains and families |

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