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Protein

Peroxisome proliferator-activated receptor gamma coactivator-related protein 1

Gene

PPRC1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 5 out of 5-Experimental evidence at protein leveli

Functioni

Acts as a coactivator during transcriptional activation of nuclear genes related to mitochondrial biogenesis and cell growth. Involved in the transcription coactivation of CREB and NRF1 target genes.2 Publications

GO - Molecular functioni

  1. ligand-dependent nuclear receptor transcription coactivator activity Source: GO_Central
  2. nucleotide binding Source: InterPro
  3. poly(A) RNA binding Source: UniProtKB
  4. RNA polymerase II transcription cofactor activity Source: GO_Central
  5. transcription factor binding Source: GO_Central

GO - Biological processi

  1. mitochondrion organization Source: Reactome
  2. organelle organization Source: Reactome
  3. positive regulation of sequence-specific DNA binding transcription factor activity Source: GO_Central
  4. positive regulation of transcription from RNA polymerase II promoter Source: GO_Central
  5. transcription from RNA polymerase II promoter Source: GOC
Complete GO annotation...

Keywords - Molecular functioni

Activator

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

RNA-binding

Enzyme and pathway databases

ReactomeiREACT_264212. Transcriptional activation of mitochondrial biogenesis.

Names & Taxonomyi

Protein namesi
Recommended name:
Peroxisome proliferator-activated receptor gamma coactivator-related protein 1
Alternative name(s):
PGC-1-related coactivator
Short name:
PRC
Gene namesi
Name:PPRC1
Synonyms:KIAA0595
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
ProteomesiUP000005640 Componenti: Chromosome 10

Organism-specific databases

HGNCiHGNC:30025. PPRC1.

Subcellular locationi

Nucleus 1 Publication
Note: Colocalizes with NRF1.By similarity

GO - Cellular componenti

  1. nucleoplasm Source: HPA
Complete GO annotation...

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134886297.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 16641664Peroxisome proliferator-activated receptor gamma coactivator-related protein 1PRO_0000296666Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Modified residuei536 – 5361Phosphoserine1 Publication
Modified residuei1411 – 14111Phosphoserine1 Publication
Modified residuei1413 – 14131Phosphoserine1 Publication

Keywords - PTMi

Phosphoprotein

Proteomic databases

MaxQBiQ5VV67.
PaxDbiQ5VV67.
PRIDEiQ5VV67.

PTM databases

PhosphoSiteiQ5VV67.

Expressioni

Tissue specificityi

Strongly expressed in heart and skeletal muscle, moderately in lung, placenta, intestine, liver, kidney, spleen, thymus, colon and brain. Also expressed in several oncocytic thyroid tumors.2 Publications

Inductioni

Up-regulated by serum (at protein level).1 Publication

Gene expression databases

BgeeiQ5VV67.
CleanExiHS_PPRC1.
ExpressionAtlasiQ5VV67. baseline and differential.
GenevestigatoriQ5VV67.

Organism-specific databases

HPAiHPA038511.

Interactioni

Subunit structurei

Interacts with CREB1 and NRF1.2 Publications

Protein-protein interaction databases

BioGridi116713. 5 interactions.
IntActiQ5VV67. 2 interactions.
STRINGi9606.ENSP00000278070.

Structurei

3D structure databases

ProteinModelPortaliQ5VV67.
SMRiQ5VV67. Positions 1541-1632.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini1543 – 161977RRMPROSITE-ProRule annotationAdd
BLAST

Region

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Regioni433 – 46735Necessary for interaction with CREB1 and NRF1 and for transcriptional coactivationAdd
BLAST
Regioni1379 – 145072Necessary for interaction with CREB1 and NRF1Add
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi772 – 1137366Pro-richAdd
BLAST
Compositional biasi1400 – 1543144Arg-richAdd
BLAST
Compositional biasi1411 – 1523113Ser-richAdd
BLAST

Sequence similaritiesi

Contains 1 RRM (RNA recognition motif) domain.PROSITE-ProRule annotation

Phylogenomic databases

eggNOGiNOG69689.
GeneTreeiENSGT00530000063196.
HOVERGENiHBG103282.
InParanoidiQ5VV67.
KOiK17963.
OMAiFCKRSYS.
OrthoDBiEOG7S4X5H.
PhylomeDBiQ5VV67.
TreeFamiTF343068.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q5VV67-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MAARRGRRDG VAPPPSGGPG PDPGGGARGS GWGSRSQAPY GTLGAVSGGE
60 70 80 90 100
QVLLHEEAGD SGFVSLSRLG PSLRDKDLEM EELMLQDETL LGTMQSYMDA
110 120 130 140 150
SLISLIEDFG SLGESRLSLE DQNEVSLLTA LTEILDNADS ENLSPFDSIP
160 170 180 190 200
DSELLVSPRE GSSLHKLLTL SRTPPERDLI TPVDPLGPST GSSRGSGVEM
210 220 230 240 250
SLPDPSWDFS PPSFLETSSP KLPSWRPPRS RPRWGQSPPP QQRSDGEEEE
260 270 280 290 300
EVASFSGQIL AGELDNCVSS IPDFPMHLAC PEEEDKATAA EMAVPAAGDE
310 320 330 340 350
SISSLSELVR AMHPYCLPNL THLASLEDEL QEQPDDLTLP EGCVVLEIVG
360 370 380 390 400
QAATAGDDLE IPVVVRQVSP GPRPVLLDDS LETSSALQLL MPTLESETEA
410 420 430 440 450
AVPKVTLCSE KEGLSLNSEE KLDSACLLKP REVVEPVVPK EPQNPPANAA
460 470 480 490 500
PGSQRARKGR KKKSKEQPAA CVEGYARRLR SSSRGQSTVG TEVTSQVDNL
510 520 530 540 550
QKQPQEELQK ESGPLQGKGK PRAWARAWAA ALENSSPKNL ERSAGQSSPA
560 570 580 590 600
KEGPLDLYPK LADTIQTNPI PTHLSLVDSA QASPMPVDSV EADPTAVGPV
610 620 630 640 650
LAGPVPVDPG LVDLASTSSE LVEPLPAEPV LINPVLADSA AVDPAVVPIS
660 670 680 690 700
DNLPPVDAVP SGPAPVDLAL VDPVPNDLTP VDPVLVKSRP TDPRRGAVSS
710 720 730 740 750
ALGGSAPQLL VESESLDPPK TIIPEVKEVV DSLKIESGTS ATTHEARPRP
760 770 780 790 800
LSLSEYRRRR QQRQAETEER SPQPPTGKWP SLPETPTGLA DIPCLVIPPA
810 820 830 840 850
PAKKTALQRS PETPLEICLV PVGPSPASPS PEPPVSKPVA SSPTEQVPSQ
860 870 880 890 900
EMPLLARPSP PVQSVSPAVP TPPSMSAALP FPAGGLGMPP SLPPPPLQPP
910 920 930 940 950
SLPLSMGPVL PDPFTHYAPL PSWPCYPHVS PSGYPCLPPP PTVPLVSGTP
960 970 980 990 1000
GAYAVPPTCS VPWAPPPAPV SPYSSTCTYG PLGWGPGPQH APFWSTVPPP
1010 1020 1030 1040 1050
PLPPASIGRA VPQPKMESRG TPAGPPENVL PLSMAPPLSL GLPGHGAPQT
1060 1070 1080 1090 1100
EPTKVEVKPV PASPHPKHKV SALVQSPQMK ALACVSAEGV TVEEPASERL
1110 1120 1130 1140 1150
KPETQETRPR EKPPLPATKA VPTPRQSTVP KLPAVHPARL RKLSFLPTPR
1160 1170 1180 1190 1200
TQGSEDVVQA FISEIGIEAS DLSSLLEQFE KSEAKKECPP PAPADSLAVG
1210 1220 1230 1240 1250
NSGGVDIPQE KRPLDRLQAP ELANVAGLTP PATPPHQLWK PLAAVSLLAK
1260 1270 1280 1290 1300
AKSPKSTAQE GTLKPEGVTE AKHPAAVRLQ EGVHGPSRVH VGSGDHDYCV
1310 1320 1330 1340 1350
RSRTPPKKMP ALVIPEVGSR WNVKRHQDIT IKPVLSLGPA APPPPCIAAS
1360 1370 1380 1390 1400
REPLDHRTSS EQADPSAPCL APSSLLSPEA SPCRNDMNTR TPPEPSAKQR
1410 1420 1430 1440 1450
SMRCYRKACR SASPSSQGWQ GRRGRNSRSV SSGSNRTSEA SSSSSSSSSS
1460 1470 1480 1490 1500
SRSRSRSLSP PHKRWRRSSC SSSGRSRRCS SSSSSSSSSS SSSSSSSSSR
1510 1520 1530 1540 1550
SRSRSPSPRR RSDRRRRYSS YRSHDHYQRQ RVLQKERAIE ERRVVFIGKI
1560 1570 1580 1590 1600
PGRMTRSELK QRFSVFGEIE ECTIHFRVQG DNYGFVTYRY AEEAFAAIES
1610 1620 1630 1640 1650
GHKLRQADEQ PFDLCFGGRR QFCKRSYSDL DSNREDFDPA PVKSKFDSLD
1660
FDTLLKQAQK NLRR
Length:1,664
Mass (Da):177,544
Last modified:December 6, 2004 - v1
Checksum:i01D4138F80C620E8
GO
Isoform 2 (identifier: Q5VV67-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-120: Missing.
     121-147: DQNEVSLLTALTEILDNADSENLSPFD → MRHCWGPCRATWMPPLSPSLRILGALE
     1518-1519: Missing.

Show »
Length:1,542
Mass (Da):164,965
Checksum:i9B120057AA1A0CA4
GO

Sequence cautioni

The sequence AAH02561.2 differs from that shown. Reason: Frameshift at position 1643. Curated
The sequence BAA25521.2 differs from that shown. Reason: Erroneous initiation. Curated

Experimental Info

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Sequence conflicti33 – 331G → R in AAK11573 (PubMed:11340167).Curated
Sequence conflicti69 – 691L → Q in AAK11573 (PubMed:11340167).Curated
Sequence conflicti122 – 1221Q → H in AAK11573 (PubMed:11340167).Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti536 – 5361S → G.
Corresponds to variant rs17114388 [ dbSNP | Ensembl ].
VAR_034633
Natural varianti834 – 8341P → R.1 Publication
Corresponds to variant rs17855877 [ dbSNP | Ensembl ].
VAR_034634

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 120120Missing in isoform 2. 1 PublicationVSP_027229Add
BLAST
Alternative sequencei121 – 14727DQNEV…LSPFD → MRHCWGPCRATWMPPLSPSL RILGALE in isoform 2. 1 PublicationVSP_027230Add
BLAST
Alternative sequencei1518 – 15192Missing in isoform 2. 1 PublicationVSP_027231

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF325193 mRNA. Translation: AAK11573.1.
AB011167 mRNA. Translation: BAA25521.2. Different initiation.
AL500527 Genomic DNA. Translation: CAH72218.1.
AL500527 Genomic DNA. Translation: CAH72219.1.
BC002561 mRNA. Translation: AAH02561.2. Frameshift.
BC063806 mRNA. Translation: AAH63806.1.
BC063829 mRNA. Translation: AAH63829.1.
CCDSiCCDS7529.1. [Q5VV67-1]
PIRiT00273.
RefSeqiNP_001275656.1. NM_001288727.1.
NP_001275657.1. NM_001288728.1. [Q5VV67-2]
NP_055877.3. NM_015062.4. [Q5VV67-1]
UniGeneiHs.533551.

Genome annotation databases

EnsembliENST00000278070; ENSP00000278070; ENSG00000148840. [Q5VV67-1]
GeneIDi23082.
KEGGihsa:23082.
UCSCiuc001kum.3. human. [Q5VV67-1]
uc001kun.3. human. [Q5VV67-2]

Polymorphism databases

DMDMi74756889.

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AF325193 mRNA. Translation: AAK11573.1.
AB011167 mRNA. Translation: BAA25521.2. Different initiation.
AL500527 Genomic DNA. Translation: CAH72218.1.
AL500527 Genomic DNA. Translation: CAH72219.1.
BC002561 mRNA. Translation: AAH02561.2. Frameshift.
BC063806 mRNA. Translation: AAH63806.1.
BC063829 mRNA. Translation: AAH63829.1.
CCDSiCCDS7529.1. [Q5VV67-1]
PIRiT00273.
RefSeqiNP_001275656.1. NM_001288727.1.
NP_001275657.1. NM_001288728.1. [Q5VV67-2]
NP_055877.3. NM_015062.4. [Q5VV67-1]
UniGeneiHs.533551.

3D structure databases

ProteinModelPortaliQ5VV67.
SMRiQ5VV67. Positions 1541-1632.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi116713. 5 interactions.
IntActiQ5VV67. 2 interactions.
STRINGi9606.ENSP00000278070.

PTM databases

PhosphoSiteiQ5VV67.

Polymorphism databases

DMDMi74756889.

Proteomic databases

MaxQBiQ5VV67.
PaxDbiQ5VV67.
PRIDEiQ5VV67.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000278070; ENSP00000278070; ENSG00000148840. [Q5VV67-1]
GeneIDi23082.
KEGGihsa:23082.
UCSCiuc001kum.3. human. [Q5VV67-1]
uc001kun.3. human. [Q5VV67-2]

Organism-specific databases

CTDi23082.
GeneCardsiGC10P103882.
HGNCiHGNC:30025. PPRC1.
HPAiHPA038511.
neXtProtiNX_Q5VV67.
PharmGKBiPA134886297.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiNOG69689.
GeneTreeiENSGT00530000063196.
HOVERGENiHBG103282.
InParanoidiQ5VV67.
KOiK17963.
OMAiFCKRSYS.
OrthoDBiEOG7S4X5H.
PhylomeDBiQ5VV67.
TreeFamiTF343068.

Enzyme and pathway databases

ReactomeiREACT_264212. Transcriptional activation of mitochondrial biogenesis.

Miscellaneous databases

ChiTaRSiPPRC1. human.
GeneWikiiPPRC1.
GenomeRNAii23082.
NextBioi44209.
PROiQ5VV67.

Gene expression databases

BgeeiQ5VV67.
CleanExiHS_PPRC1.
ExpressionAtlasiQ5VV67. baseline and differential.
GenevestigatoriQ5VV67.

Family and domain databases

Gene3Di3.30.70.330. 1 hit.
InterProiIPR012677. Nucleotide-bd_a/b_plait.
IPR000504. RRM_dom.
[Graphical view]
PfamiPF00076. RRM_1. 1 hit.
[Graphical view]
SMARTiSM00360. RRM. 1 hit.
[Graphical view]
PROSITEiPS50102. RRM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Pgc-1-related coactivator, a novel, serum-inducible coactivator of nuclear respiratory factor 1-dependent transcription in mammalian cells."
    Andersson U., Scarpulla R.C.
    Mol. Cell. Biol. 21:3738-3749(2000) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1), FUNCTION, INTERACTION WITH NRF1, SUBCELLULAR LOCATION, TISSUE SPECIFICITY.
  2. "Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro."
    Nagase T., Ishikawa K., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
    DNA Res. 5:31-39(1997) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 1).
    Tissue: Brain.
  3. "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones."
    Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.
    DNA Res. 9:99-106(2001) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION.
  4. "The DNA sequence and comparative analysis of human chromosome 10."
    Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J.
    , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
    Nature 429:375-381(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  5. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2003) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2), NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 998-1664 (ISOFORM 1), VARIANT ARG-834.
    Tissue: Placenta and Uterus.
  6. Cited for: TISSUE SPECIFICITY.
  7. "PGC-1-related coactivator: immediate early expression and characterization of a CREB/NRF-1 binding domain associated with cytochrome c promoter occupancy and respiratory growth."
    Vercauteren K., Pasko R.A., Gleyzer N., Marino V.M., Scarpulla R.C.
    Mol. Cell. Biol. 26:7409-7419(2005) [PubMed] [Europe PMC] [Abstract]
    Cited for: FUNCTION, INTERACTION WITH CREB1 AND NRF1, INDUCTION.
  8. "Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis."
    Olsen J.V., Vermeulen M., Santamaria A., Kumar C., Miller M.L., Jensen L.J., Gnad F., Cox J., Jensen T.S., Nigg E.A., Brunak S., Mann M.
    Sci. Signal. 3:RA3-RA3(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-536, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].
    Tissue: Cervix carcinoma.
  9. "System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation."
    Rigbolt K.T., Prokhorova T.A., Akimov V., Henningsen J., Johansen P.T., Kratchmarova I., Kassem M., Mann M., Olsen J.V., Blagoev B.
    Sci. Signal. 4:RS3-RS3(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: PHOSPHORYLATION [LARGE SCALE ANALYSIS] AT SER-1411 AND SER-1413, IDENTIFICATION BY MASS SPECTROMETRY [LARGE SCALE ANALYSIS].

Entry informationi

Entry nameiPPRC1_HUMAN
AccessioniPrimary (citable) accession number: Q5VV67
Secondary accession number(s): Q5VV66
, Q6P3U5, Q6P3W1, Q76N31, Q9BUJ3, Q9BZE5, Q9Y4E0
Entry historyi
Integrated into UniProtKB/Swiss-Prot: July 23, 2007
Last sequence update: December 6, 2004
Last modified: March 31, 2015
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.