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Protein

Attractin-like protein 1

Gene

ATRNL1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at transcript leveli

Functioni

May play a role in melanocortin signaling pathways that regulate energy homeostasis.By similarity

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Lectin

Names & Taxonomyi

Protein namesi
Recommended name:
Attractin-like protein 1
Gene namesi
Name:ATRNL1
Synonyms:KIAA0534
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 10

Organism-specific databases

HGNCiHGNC:29063. ATRNL1.

Subcellular locationi

Topology

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Topological domaini53 – 12301178ExtracellularSequence analysisAdd
BLAST
Transmembranei1231 – 125121HelicalSequence analysisAdd
BLAST
Topological domaini1252 – 1379128CytoplasmicSequence analysisAdd
BLAST

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Membrane

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA134961599.

Polymorphism and mutation databases

BioMutaiATRNL1.
DMDMi189081675.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Signal peptidei1 – 5252Sequence analysisAdd
BLAST
Chaini53 – 13791327Attractin-like protein 1PRO_0000334650Add
BLAST

Amino acid modifications

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Disulfide bondi63 ↔ 79By similarity
Glycosylationi76 – 761N-linked (GlcNAc...)Sequence analysis
Disulfide bondi81 ↔ 90By similarity
Disulfide bondi93 ↔ 119By similarity
Glycosylationi174 – 1741N-linked (GlcNAc...)Sequence analysis
Glycosylationi198 – 1981N-linked (GlcNAc...)Sequence analysis
Disulfide bondi211 ↔ 221By similarity
Disulfide bondi215 ↔ 233By similarity
Disulfide bondi235 ↔ 244By similarity
Glycosylationi380 – 3801N-linked (GlcNAc...)Sequence analysis
Glycosylationi763 – 7631N-linked (GlcNAc...)Sequence analysis
Disulfide bondi776 ↔ 872By similarity
Glycosylationi778 – 7781N-linked (GlcNAc...)Sequence analysis
Glycosylationi898 – 8981N-linked (GlcNAc...)Sequence analysis
Disulfide bondi1014 ↔ 1022By similarity
Disulfide bondi1016 ↔ 1028By similarity
Disulfide bondi1031 ↔ 1040By similarity
Disulfide bondi1043 ↔ 1057By similarity
Disulfide bondi1060 ↔ 1069By similarity
Disulfide bondi1062 ↔ 1076By similarity
Disulfide bondi1078 ↔ 1088By similarity
Disulfide bondi1091 ↔ 1106By similarity
Glycosylationi1157 – 11571N-linked (GlcNAc...)Sequence analysis

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PaxDbiQ5VV63.
PRIDEiQ5VV63.

PTM databases

PhosphoSiteiQ5VV63.

Expressioni

Gene expression databases

BgeeiQ5VV63.
CleanExiHS_ATRNL1.
ExpressionAtlasiQ5VV63. baseline and differential.
GenevisibleiQ5VV63. HS.

Organism-specific databases

HPAiHPA038070.

Interactioni

Subunit structurei

Interacts with MC4R.By similarity

Protein-protein interaction databases

BioGridi117499. 1 interaction.
IntActiQ5VV63. 1 interaction.
STRINGi9606.ENSP00000347152.

Structurei

3D structure databases

ProteinModelPortaliQ5VV63.
SMRiQ5VV63. Positions 93-225, 317-520, 750-877, 1021-1111.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini53 – 9139EGF-like 1PROSITE-ProRule annotationAdd
BLAST
Domaini93 – 209117CUBPROSITE-ProRule annotationAdd
BLAST
Domaini207 – 24539EGF-like 2PROSITE-ProRule annotationAdd
BLAST
Repeati316 – 36550Kelch 1Add
BLAST
Repeati367 – 41549Kelch 2Add
BLAST
Repeati427 – 47549Kelch 3Add
BLAST
Repeati480 – 53152Kelch 4Add
BLAST
Repeati533 – 59159Kelch 5Add
BLAST
Repeati592 – 63847Kelch 6Add
BLAST
Domaini614 – 65744PSI 1Add
BLAST
Domaini666 – 70944PSI 2Add
BLAST
Domaini715 – 76046PSI 3Add
BLAST
Domaini755 – 873119C-type lectinPROSITE-ProRule annotationAdd
BLAST
Domaini889 – 93951PSI 4Add
BLAST
Domaini942 – 101271PSI 5Add
BLAST
Domaini1014 – 105946Laminin EGF-like 1PROSITE-ProRule annotationAdd
BLAST
Domaini1060 – 110849Laminin EGF-like 2PROSITE-ProRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 C-type lectin domain.PROSITE-ProRule annotation
Contains 1 CUB domain.PROSITE-ProRule annotation
Contains 2 EGF-like domains.PROSITE-ProRule annotation
Contains 6 Kelch repeats.Curated
Contains 2 laminin EGF-like domains.PROSITE-ProRule annotation
Contains 5 PSI domains.Curated

Keywords - Domaini

EGF-like domain, Kelch repeat, Laminin EGF-like domain, Repeat, Signal, Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiKOG1388. Eukaryota.
ENOG410XRW4. LUCA.
GeneTreeiENSGT00390000001118.
HOVERGENiHBG004312.
InParanoidiQ5VV63.
OMAiRENYDNA.
OrthoDBiEOG7D59MM.
PhylomeDBiQ5VV63.
TreeFamiTF321873.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
2.60.120.290. 1 hit.
3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR016187. C-type_lectin_fold.
IPR000859. CUB_dom.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR013111. EGF_extracell.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
IPR002049. Laminin_EGF.
IPR016201. Plexin-like_fold.
IPR002165. Plexin_repeat.
[Graphical view]
PfamiPF00431. CUB. 1 hit.
PF07974. EGF_2. 1 hit.
PF01344. Kelch_1. 1 hit.
PF00059. Lectin_C. 1 hit.
PF01437. PSI. 2 hits.
[Graphical view]
SMARTiSM00034. CLECT. 1 hit.
SM00042. CUB. 1 hit.
SM00181. EGF. 3 hits.
SM00180. EGF_Lam. 2 hits.
SM00423. PSI. 5 hits.
[Graphical view]
SUPFAMiSSF49854. SSF49854. 1 hit.
SSF56436. SSF56436. 1 hit.
PROSITEiPS50041. C_TYPE_LECTIN_2. 1 hit.
PS01180. CUB. 1 hit.
PS00022. EGF_1. 3 hits.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 2 hits.
PS01248. EGF_LAM_1. 1 hit.
PS50027. EGF_LAM_2. 2 hits.
[Graphical view]

Sequences (2)i

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q5VV63-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
METGGRARTG TPQPAAPGVW RARPAGGGGG GASSWLLDGN SWLLCYGFLY
60 70 80 90 100
LALYAQVSQS KPCERTGSCF SGRCVNSTCL CDPGWVGDQC QHCQGRFKLT
110 120 130 140 150
EPSGYLTDGP INYKYKTKCT WLIEGYPNAV LRLRFNHFAT ECSWDHMYVY
160 170 180 190 200
DGDSIYAPLI AVLSGLIVPE IRGNETVPEV VTTSGYALLH FFSDAAYNLT
210 220 230 240 250
GFNIFYSINS CPNNCSGHGK CTTSVSVPSQ VYCECDKYWK GEACDIPYCK
260 270 280 290 300
ANCGSPDHGY CDLTGEKLCV CNDSWQGPDC SLNVPSTESY WILPNVKPFS
310 320 330 340 350
PSVGRASHKA VLHGKFMWVI GGYTFNYSSF QMVLNYNLES SIWNVGTPSR
360 370 380 390 400
GPLQRYGHSL ALYQENIFMY GGRIETNDGN VTDELWVFNI HSQSWSTKTP
410 420 430 440 450
TVLGHGQQYA VEGHSAHIME LDSRDVVMII IFGYSAIYGY TSSIQEYHIS
460 470 480 490 500
SNTWLVPETK GAIVQGGYGH TSVYDEITKS IYVHGGYKAL PGNKYGLVDD
510 520 530 540 550
LYKYEVNTKT WTILKESGFA RYLHSAVLIN GAMLIFGGNT HNDTSLSNGA
560 570 580 590 600
KCFSADFLAY DIACDEWKIL PKPNLHRDVN RFGHSAVVIN GSMYIFGGFS
610 620 630 640 650
SVLLNDILVY KPPNCKAFRD EELCKNAGPG IKCVWNKNHC ESWESGNTNN
660 670 680 690 700
ILRAKCPPKT AASDDRCYRY ADCASCTANT NGCQWCDDKK CISANSNCSM
710 720 730 740 750
SVKNYTKCHV RNEQICNKLT SCKSCSLNLN CQWDQRQQEC QALPAHLCGE
760 770 780 790 800
GWSHIGDACL RVNSSRENYD NAKLYCYNLS GNLASLTTSK EVEFVLDEIQ
810 820 830 840 850
KYTQQKVSPW VGLRKINISY WGWEDMSPFT NTTLQWLPGE PNDSGFCAYL
860 870 880 890 900
ERAAVAGLKA NPCTSMANGL VCEKPVVSPN QNARPCKKPC SLRTSCSNCT
910 920 930 940 950
SNGMECMWCS STKRCVDSNA YIISFPYGQC LEWQTATCSP QNCSGLRTCG
960 970 980 990 1000
QCLEQPGCGW CNDPSNTGRG HCIEGSSRGP MKLIGMHHSE MVLDTNLCPK
1010 1020 1030 1040 1050
EKNYEWSFIQ CPACQCNGHS TCINNNVCEQ CKNLTTGKQC QDCMPGYYGD
1060 1070 1080 1090 1100
PTNGGQCTAC TCSGHANICH LHTGKCFCTT KGIKGDQCQL CDSENRYVGN
1110 1120 1130 1140 1150
PLRGTCYYSL LIDYQFTFSL LQEDDRHHTA INFIANPEQS NKNLDISINA
1160 1170 1180 1190 1200
SNNFNLNITW SVGSTAGTIS GEETSIVSKN NIKEYRDSFS YEKFNFRSNP
1210 1220 1230 1240 1250
NITFYVYVSN FSWPIKIQIA FSQHNTIMDL VQFFVTFFSC FLSLLLVAAV
1260 1270 1280 1290 1300
VWKIKQTCWA SRRREQLLRE RQQMASRPFA SVDVALEVGA EQTEFLRGPL
1310 1320 1330 1340 1350
EGAPKPIAIE PCAGNRAAVL TVFLCLPRGS SGAPPPGQSG LAIASALIDI
1360 1370
SQQKASDSKD KTSGVRNRKH LSTRQGTCV
Length:1,379
Mass (Da):152,639
Last modified:February 20, 2007 - v2
Checksum:i67904F946FAF6028
GO
Isoform 2 (identifier: Q5VV63-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     450-467: SSNTWLVPETKGAIVQGG → CELLKNCNFFIDWECFSL
     468-1379: Missing.

Note: No experimental confirmation available.
Show »
Length:467
Mass (Da):51,867
Checksum:iC66273EDFFEC1E01
GO

Sequence cautioni

The sequence BAC86914.1 differs from that shown. Reason: Erroneous initiation. Curated
The sequence CAI13482.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAI40416.1 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAI40793.1 differs from that shown. Reason: Erroneous gene model prediction. Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti989 – 9891S → N.2 Publications
Corresponds to variant rs1953758 [ dbSNP | Ensembl ].
VAR_043446

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei450 – 46718SSNTW…IVQGG → CELLKNCNFFIDWECFSL in isoform 2. 1 PublicationVSP_033718Add
BLAST
Alternative sequencei468 – 1379912Missing in isoform 2. 1 PublicationVSP_033719Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY442317 mRNA. Translation: AAR14297.1.
AL357059
, AC022542, AC091667, AL355530, AL356100, AL392087, AL512304 Genomic DNA. Translation: CAH70625.2.
AL512304
, AC022542, AC091667, AL355530, AL356100, AL357059, AL392087 Genomic DNA. Translation: CAH74015.2.
AL355530
, AC022542, AC091667, AL356100, AL357059, AL392087, AL512304 Genomic DNA. Translation: CAI13483.2.
AL356100
, AC022542, AC091667, AL355530, AL357059, AL392087, AL512304 Genomic DNA. Translation: CAI40417.2.
AL392087
, AC022542, AC091667, AL355530, AL356100, AL357059, AL512304 Genomic DNA. Translation: CAI40794.2.
AL355530 Genomic DNA. Translation: CAI13482.1. Sequence problems.
AL356100, AL392087 Genomic DNA. Translation: CAI40416.1. Sequence problems.
AL392087, AL356100 Genomic DNA. Translation: CAI40793.1. Sequence problems.
BC047716 mRNA. Translation: AAH47716.1.
BC139916 mRNA. Translation: AAI39917.1.
BC139923 mRNA. Translation: AAI39924.1.
AK127277 mRNA. Translation: BAC86914.1. Different initiation.
AB011106 mRNA. Translation: BAA25460.2.
CCDSiCCDS73204.1. [Q5VV63-2]
CCDS7592.1. [Q5VV63-1]
PIRiT00266.
RefSeqiNP_001263211.1. NM_001276282.3. [Q5VV63-2]
NP_997186.1. NM_207303.4. [Q5VV63-1]
UniGeneiHs.501127.

Genome annotation databases

EnsembliENST00000355044; ENSP00000347152; ENSG00000107518. [Q5VV63-1]
ENST00000609571; ENSP00000476902; ENSG00000107518. [Q5VV63-2]
GeneIDi26033.
KEGGihsa:26033.
UCSCiuc001lcg.4. human. [Q5VV63-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY442317 mRNA. Translation: AAR14297.1.
AL357059
, AC022542, AC091667, AL355530, AL356100, AL392087, AL512304 Genomic DNA. Translation: CAH70625.2.
AL512304
, AC022542, AC091667, AL355530, AL356100, AL357059, AL392087 Genomic DNA. Translation: CAH74015.2.
AL355530
, AC022542, AC091667, AL356100, AL357059, AL392087, AL512304 Genomic DNA. Translation: CAI13483.2.
AL356100
, AC022542, AC091667, AL355530, AL357059, AL392087, AL512304 Genomic DNA. Translation: CAI40417.2.
AL392087
, AC022542, AC091667, AL355530, AL356100, AL357059, AL512304 Genomic DNA. Translation: CAI40794.2.
AL355530 Genomic DNA. Translation: CAI13482.1. Sequence problems.
AL356100, AL392087 Genomic DNA. Translation: CAI40416.1. Sequence problems.
AL392087, AL356100 Genomic DNA. Translation: CAI40793.1. Sequence problems.
BC047716 mRNA. Translation: AAH47716.1.
BC139916 mRNA. Translation: AAI39917.1.
BC139923 mRNA. Translation: AAI39924.1.
AK127277 mRNA. Translation: BAC86914.1. Different initiation.
AB011106 mRNA. Translation: BAA25460.2.
CCDSiCCDS73204.1. [Q5VV63-2]
CCDS7592.1. [Q5VV63-1]
PIRiT00266.
RefSeqiNP_001263211.1. NM_001276282.3. [Q5VV63-2]
NP_997186.1. NM_207303.4. [Q5VV63-1]
UniGeneiHs.501127.

3D structure databases

ProteinModelPortaliQ5VV63.
SMRiQ5VV63. Positions 93-225, 317-520, 750-877, 1021-1111.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi117499. 1 interaction.
IntActiQ5VV63. 1 interaction.
STRINGi9606.ENSP00000347152.

PTM databases

PhosphoSiteiQ5VV63.

Polymorphism and mutation databases

BioMutaiATRNL1.
DMDMi189081675.

Proteomic databases

PaxDbiQ5VV63.
PRIDEiQ5VV63.

Protocols and materials databases

DNASUi26033.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000355044; ENSP00000347152; ENSG00000107518. [Q5VV63-1]
ENST00000609571; ENSP00000476902; ENSG00000107518. [Q5VV63-2]
GeneIDi26033.
KEGGihsa:26033.
UCSCiuc001lcg.4. human. [Q5VV63-1]

Organism-specific databases

CTDi26033.
GeneCardsiATRNL1.
H-InvDBHIX0021959.
HGNCiHGNC:29063. ATRNL1.
HPAiHPA038070.
MIMi612869. gene.
neXtProtiNX_Q5VV63.
PharmGKBiPA134961599.
HUGEiSearch...
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG1388. Eukaryota.
ENOG410XRW4. LUCA.
GeneTreeiENSGT00390000001118.
HOVERGENiHBG004312.
InParanoidiQ5VV63.
OMAiRENYDNA.
OrthoDBiEOG7D59MM.
PhylomeDBiQ5VV63.
TreeFamiTF321873.

Miscellaneous databases

ChiTaRSiATRNL1. human.
GenomeRNAii26033.
NextBioi47842.
PROiQ5VV63.
SOURCEiSearch...

Gene expression databases

BgeeiQ5VV63.
CleanExiHS_ATRNL1.
ExpressionAtlasiQ5VV63. baseline and differential.
GenevisibleiQ5VV63. HS.

Family and domain databases

Gene3Di2.120.10.80. 1 hit.
2.60.120.290. 1 hit.
3.10.100.10. 1 hit.
InterProiIPR001304. C-type_lectin.
IPR016186. C-type_lectin-like.
IPR016187. C-type_lectin_fold.
IPR000859. CUB_dom.
IPR013032. EGF-like_CS.
IPR000742. EGF-like_dom.
IPR013111. EGF_extracell.
IPR015915. Kelch-typ_b-propeller.
IPR006652. Kelch_1.
IPR002049. Laminin_EGF.
IPR016201. Plexin-like_fold.
IPR002165. Plexin_repeat.
[Graphical view]
PfamiPF00431. CUB. 1 hit.
PF07974. EGF_2. 1 hit.
PF01344. Kelch_1. 1 hit.
PF00059. Lectin_C. 1 hit.
PF01437. PSI. 2 hits.
[Graphical view]
SMARTiSM00034. CLECT. 1 hit.
SM00042. CUB. 1 hit.
SM00181. EGF. 3 hits.
SM00180. EGF_Lam. 2 hits.
SM00423. PSI. 5 hits.
[Graphical view]
SUPFAMiSSF49854. SSF49854. 1 hit.
SSF56436. SSF56436. 1 hit.
PROSITEiPS50041. C_TYPE_LECTIN_2. 1 hit.
PS01180. CUB. 1 hit.
PS00022. EGF_1. 3 hits.
PS01186. EGF_2. 1 hit.
PS50026. EGF_3. 2 hits.
PS01248. EGF_LAM_1. 1 hit.
PS50027. EGF_LAM_2. 2 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Attractin-like peptides."
    Milton N.G.N.
    Submitted (OCT-2003) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [MRNA] (ISOFORM 1).
  2. "The DNA sequence and comparative analysis of human chromosome 10."
    Deloukas P., Earthrowl M.E., Grafham D.V., Rubenfield M., French L., Steward C.A., Sims S.K., Jones M.C., Searle S., Scott C., Howe K., Hunt S.E., Andrews T.D., Gilbert J.G.R., Swarbreck D., Ashurst J.L., Taylor A., Battles J.
    , Bird C.P., Ainscough R., Almeida J.P., Ashwell R.I.S., Ambrose K.D., Babbage A.K., Bagguley C.L., Bailey J., Banerjee R., Bates K., Beasley H., Bray-Allen S., Brown A.J., Brown J.Y., Burford D.C., Burrill W., Burton J., Cahill P., Camire D., Carter N.P., Chapman J.C., Clark S.Y., Clarke G., Clee C.M., Clegg S., Corby N., Coulson A., Dhami P., Dutta I., Dunn M., Faulkner L., Frankish A., Frankland J.A., Garner P., Garnett J., Gribble S., Griffiths C., Grocock R., Gustafson E., Hammond S., Harley J.L., Hart E., Heath P.D., Ho T.P., Hopkins B., Horne J., Howden P.J., Huckle E., Hynds C., Johnson C., Johnson D., Kana A., Kay M., Kimberley A.M., Kershaw J.K., Kokkinaki M., Laird G.K., Lawlor S., Lee H.M., Leongamornlert D.A., Laird G., Lloyd C., Lloyd D.M., Loveland J., Lovell J., McLaren S., McLay K.E., McMurray A., Mashreghi-Mohammadi M., Matthews L., Milne S., Nickerson T., Nguyen M., Overton-Larty E., Palmer S.A., Pearce A.V., Peck A.I., Pelan S., Phillimore B., Porter K., Rice C.M., Rogosin A., Ross M.T., Sarafidou T., Sehra H.K., Shownkeen R., Skuce C.D., Smith M., Standring L., Sycamore N., Tester J., Thorpe A., Torcasso W., Tracey A., Tromans A., Tsolas J., Wall M., Walsh J., Wang H., Weinstock K., West A.P., Willey D.L., Whitehead S.L., Wilming L., Wray P.W., Young L., Chen Y., Lovering R.C., Moschonas N.K., Siebert R., Fechtel K., Bentley D., Durbin R.M., Hubbard T., Doucette-Stamm L., Beck S., Smith D.R., Rogers J.
    Nature 429:375-381(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORM 2).
    Tissue: Brain.
  4. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 47-1379 (ISOFORM 1), VARIANT ASN-989.
    Tissue: Hippocampus.
  5. "Prediction of the coding sequences of unidentified human genes. IX. The complete sequences of 100 new cDNA clones from brain which can code for large proteins in vitro."
    Nagase T., Ishikawa K., Miyajima N., Tanaka A., Kotani H., Nomura N., Ohara O.
    DNA Res. 5:31-39(1998) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 352-1379 (ISOFORM 1), VARIANT ASN-989.
    Tissue: Brain.
  6. "Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones."
    Nakajima D., Okazaki N., Yamakawa H., Kikuno R., Ohara O., Nagase T.
    DNA Res. 9:99-106(2002) [PubMed] [Europe PMC] [Abstract]
    Cited for: SEQUENCE REVISION.

Entry informationi

Entry nameiATRN1_HUMAN
AccessioniPrimary (citable) accession number: Q5VV63
Secondary accession number(s): O60283
, Q5JSE8, Q5T5Y9, Q6T256, Q6ZSN4, Q86WX2
Entry historyi
Integrated into UniProtKB/Swiss-Prot: May 20, 2008
Last sequence update: February 20, 2007
Last modified: May 11, 2016
This is version 118 of the entry and version 2 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 10
    Human chromosome 10: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.