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Protein

WD repeat-containing protein 78

Gene

WDR78

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: Annotation score: 3 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

SignaLinkiQ5VTH9.

Names & Taxonomyi

Protein namesi
Recommended name:
WD repeat-containing protein 78
Gene namesi
Name:WDR78
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 1

Organism-specific databases

HGNCiHGNC:26252. WDR78.

Pathology & Biotechi

Organism-specific databases

PharmGKBiPA142670582.

Polymorphism and mutation databases

BioMutaiWDR78.
DMDMi74756797.

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 848848WD repeat-containing protein 78PRO_0000262773Add
BLAST

Proteomic databases

EPDiQ5VTH9.
PaxDbiQ5VTH9.
PRIDEiQ5VTH9.

PTM databases

iPTMnetiQ5VTH9.
PhosphoSiteiQ5VTH9.

Expressioni

Gene expression databases

BgeeiQ5VTH9.
CleanExiHS_WDR78.
ExpressionAtlasiQ5VTH9. baseline and differential.
GenevisibleiQ5VTH9. HS.

Organism-specific databases

HPAiHPA045793.

Interactioni

Protein-protein interaction databases

STRINGi9606.ENSP00000360065.

Structurei

3D structure databases

ProteinModelPortaliQ5VTH9.
SMRiQ5VTH9. Positions 483-523, 682-820.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Repeati534 – 57441WD 1Add
BLAST
Repeati583 – 63149WD 2Add
BLAST
Repeati658 – 69841WD 3Add
BLAST
Repeati702 – 74241WD 4Add
BLAST
Repeati745 – 78440WD 5Add
BLAST
Repeati790 – 82940WD 6Add
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili438 – 46831Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi431 – 46535Glu-richAdd
BLAST

Sequence similaritiesi

Contains 6 WD repeats.PROSITE-ProRule annotation

Keywords - Domaini

Coiled coil, Repeat, WD repeat

Phylogenomic databases

eggNOGiENOG410IU36. Eukaryota.
ENOG410YJ9J. LUCA.
GeneTreeiENSGT00730000110228.
HOVERGENiHBG059084.
InParanoidiQ5VTH9.
OMAiCSADWSI.
OrthoDBiEOG7HHWRF.
PhylomeDBiQ5VTH9.
TreeFamiTF300553.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 1 hit.
[Graphical view]
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequences (3)i

Sequence statusi: Complete.

This entry describes 3 isoformsi produced by alternative splicing. AlignAdd to basket

Isoform 1 (identifier: Q5VTH9-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MTPGKHSGAS ARAANGGAWG YRDFRGGQKK GWCTTPQLVA TMPVSPAGSH
60 70 80 90 100
KQQNFGLNNA TQPKKSISFF ATMKATSVKG YTGANQSRMA VSKTVLIPPE
110 120 130 140 150
LKTVEKPNPN IKTTQVFDIN GTDVTPRPLY HPDPLTGTAK PSKLLTSQEG
160 170 180 190 200
SLGSEFISSY SLYQNTINPS TLGQFTRSVL GSSTVSKSSV SASESIAEDL
210 220 230 240 250
EEPSYKRERL TSFTDLQVIR AAPEKIVTKE DLEKNIEIIL TETETLRFFD
260 270 280 290 300
LPTVMVSVES EEAEKVTQRN KNYEVLCRNR LGNDLYVERM MQTFNGAPKN
310 320 330 340 350
KDVQCDKIIM EDKGIMSTAW DLYDSYNAME LVSLSVKQSV VESSSKANVL
360 370 380 390 400
PKDQDQRLPG STTEKNSETS SLMDIENVIL AKIHEDEEDH SDAILKSDKF
410 420 430 440 450
HQDLFFMERV LMENIFQPKL AAYRQLPVLK EPEPEEPEDV LESAKHEEVE
460 470 480 490 500
EESKKEEEEE IHAEESTIPA NLERLWSFSC DLTKGLNVSS LAWNKTNPDL
510 520 530 540 550
LAVGYGHFGF KEQKRGLACC WSIKNPMWPE RIYQSPYGVT AVDFSIGAPN
560 570 580 590 600
LLAVGYHNGT IAIYNVRSNS NVPVLDSSES PQKHLGPVWQ LQWIEQDRGT
610 620 630 640 650
TGDGKREILV SISADGRISK WVIRKGLDCY DLMRLKRTTA ASNKKGGEKE
660 670 680 690 700
KKDEALISRQ APGMCFAFHP KDTNIYLAGT EEGHIHKCSC SYNEQYLDTY
710 720 730 740 750
RGHKGPVYKV TWNPFCHDVF LSCSADWGVI IWQQENVKPS LSFYPATSVV
760 770 780 790 800
YDVAWSPKSS YIFAAANENR VEIWDLHIST LDPLIVNTAN PGIKFTTILF
810 820 830 840
AKQTDCLLVG DSDGQVSVYE LRNMPTVLET GRGDIMDTLL GSKSNQSA
Length:848
Mass (Da):94,573
Last modified:December 7, 2004 - v1
Checksum:iED3E0BA7272E67AE
GO
Isoform 2 (identifier: Q5VTH9-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     528-545: WPERIYQSPYGVTAVDFS → VTQTRIRSIFIWLLTKFS
     546-848: Missing.

Note: No experimental confirmation available.
Show »
Length:545
Mass (Da):60,992
Checksum:iFB9ABEE1EA73DFEC
GO
Isoform 3 (identifier: Q5VTH9-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-254: Missing.
     672-704: Missing.

Note: No experimental confirmation available.Curated
Show »
Length:561
Mass (Da):63,213
Checksum:iBBBD30590E7295AD
GO

Sequence cautioni

Isoform 3 : The sequence BAB15551.1 differs from that shown. Reason: Frameshift at positions 513 and 765. Curated

Natural variant

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Natural varianti16 – 161G → A.1 Publication
Corresponds to variant rs1886686 [ dbSNP | Ensembl ].
VAR_057635
Natural varianti33 – 331C → W.
Corresponds to variant rs3008858 [ dbSNP | Ensembl ].
VAR_057636
Natural varianti832 – 8321R → Q.1 Publication
Corresponds to variant rs482082 [ dbSNP | Ensembl ].
VAR_057637

Alternative sequence

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Alternative sequencei1 – 254254Missing in isoform 3. 1 PublicationVSP_021812Add
BLAST
Alternative sequencei528 – 54518WPERI…AVDFS → VTQTRIRSIFIWLLTKFS in isoform 2. 1 PublicationVSP_021816Add
BLAST
Alternative sequencei546 – 848303Missing in isoform 2. 1 PublicationVSP_021817Add
BLAST
Alternative sequencei672 – 70433Missing in isoform 3. 1 PublicationVSP_021815Add
BLAST

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK026782 mRNA. Translation: BAB15551.1. Frameshift.
AK292830 mRNA. Translation: BAF85519.1.
AL354978, AL139216, AL592161 Genomic DNA. Translation: CAH71842.1.
AL592161, AL139216 Genomic DNA. Translation: CAH72704.1.
AL592161, AL139216, AL354978 Genomic DNA. Translation: CAH72705.1.
AL139216, AL592161 Genomic DNA. Translation: CAI18871.1.
AL139216, AL354978, AL592161 Genomic DNA. Translation: CAI18872.1.
BC032406 mRNA. Translation: AAH32406.2.
AL133617 mRNA. Translation: CAB63744.3.
CCDSiCCDS44157.1. [Q5VTH9-2]
CCDS635.1. [Q5VTH9-1]
PIRiT43473.
RefSeqiNP_079039.4. NM_024763.4. [Q5VTH9-1]
NP_996897.2. NM_207014.2. [Q5VTH9-2]
UniGeneiHs.49421.

Genome annotation databases

EnsembliENST00000371023; ENSP00000360062; ENSG00000152763. [Q5VTH9-2]
ENST00000371026; ENSP00000360065; ENSG00000152763. [Q5VTH9-1]
GeneIDi79819.
KEGGihsa:79819.
UCSCiuc001dcx.5. human. [Q5VTH9-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AK026782 mRNA. Translation: BAB15551.1. Frameshift.
AK292830 mRNA. Translation: BAF85519.1.
AL354978, AL139216, AL592161 Genomic DNA. Translation: CAH71842.1.
AL592161, AL139216 Genomic DNA. Translation: CAH72704.1.
AL592161, AL139216, AL354978 Genomic DNA. Translation: CAH72705.1.
AL139216, AL592161 Genomic DNA. Translation: CAI18871.1.
AL139216, AL354978, AL592161 Genomic DNA. Translation: CAI18872.1.
BC032406 mRNA. Translation: AAH32406.2.
AL133617 mRNA. Translation: CAB63744.3.
CCDSiCCDS44157.1. [Q5VTH9-2]
CCDS635.1. [Q5VTH9-1]
PIRiT43473.
RefSeqiNP_079039.4. NM_024763.4. [Q5VTH9-1]
NP_996897.2. NM_207014.2. [Q5VTH9-2]
UniGeneiHs.49421.

3D structure databases

ProteinModelPortaliQ5VTH9.
SMRiQ5VTH9. Positions 483-523, 682-820.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9606.ENSP00000360065.

PTM databases

iPTMnetiQ5VTH9.
PhosphoSiteiQ5VTH9.

Polymorphism and mutation databases

BioMutaiWDR78.
DMDMi74756797.

Proteomic databases

EPDiQ5VTH9.
PaxDbiQ5VTH9.
PRIDEiQ5VTH9.

Protocols and materials databases

DNASUi79819.
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000371023; ENSP00000360062; ENSG00000152763. [Q5VTH9-2]
ENST00000371026; ENSP00000360065; ENSG00000152763. [Q5VTH9-1]
GeneIDi79819.
KEGGihsa:79819.
UCSCiuc001dcx.5. human. [Q5VTH9-1]

Organism-specific databases

CTDi79819.
GeneCardsiWDR78.
H-InvDBHIX0000680.
HIX0200112.
HGNCiHGNC:26252. WDR78.
HPAiHPA045793.
neXtProtiNX_Q5VTH9.
PharmGKBiPA142670582.
GenAtlasiSearch...

Phylogenomic databases

eggNOGiENOG410IU36. Eukaryota.
ENOG410YJ9J. LUCA.
GeneTreeiENSGT00730000110228.
HOVERGENiHBG059084.
InParanoidiQ5VTH9.
OMAiCSADWSI.
OrthoDBiEOG7HHWRF.
PhylomeDBiQ5VTH9.
TreeFamiTF300553.

Enzyme and pathway databases

SignaLinkiQ5VTH9.

Miscellaneous databases

ChiTaRSiWDR78. human.
GenomeRNAii79819.
NextBioi69434.
PROiQ5VTH9.

Gene expression databases

BgeeiQ5VTH9.
CleanExiHS_WDR78.
ExpressionAtlasiQ5VTH9. baseline and differential.
GenevisibleiQ5VTH9. HS.

Family and domain databases

Gene3Di2.130.10.10. 1 hit.
InterProiIPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF00400. WD40. 1 hit.
[Graphical view]
SMARTiSM00320. WD40. 5 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
PROSITEiPS50082. WD_REPEATS_2. 2 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete sequencing and characterization of 21,243 full-length human cDNAs."
    Ota T., Suzuki Y., Nishikawa T., Otsuki T., Sugiyama T., Irie R., Wakamatsu A., Hayashi K., Sato H., Nagai K., Kimura K., Makita H., Sekine M., Obayashi M., Nishi T., Shibahara T., Tanaka T., Ishii S.
    , Yamamoto J., Saito K., Kawai Y., Isono Y., Nakamura Y., Nagahari K., Murakami K., Yasuda T., Iwayanagi T., Wagatsuma M., Shiratori A., Sudo H., Hosoiri T., Kaku Y., Kodaira H., Kondo H., Sugawara M., Takahashi M., Kanda K., Yokoi T., Furuya T., Kikkawa E., Omura Y., Abe K., Kamihara K., Katsuta N., Sato K., Tanikawa M., Yamazaki M., Ninomiya K., Ishibashi T., Yamashita H., Murakawa K., Fujimori K., Tanai H., Kimata M., Watanabe M., Hiraoka S., Chiba Y., Ishida S., Ono Y., Takiguchi S., Watanabe S., Yosida M., Hotuta T., Kusano J., Kanehori K., Takahashi-Fujii A., Hara H., Tanase T.-O., Nomura Y., Togiya S., Komai F., Hara R., Takeuchi K., Arita M., Imose N., Musashino K., Yuuki H., Oshima A., Sasaki N., Aotsuka S., Yoshikawa Y., Matsunawa H., Ichihara T., Shiohata N., Sano S., Moriya S., Momiyama H., Satoh N., Takami S., Terashima Y., Suzuki O., Nakagawa S., Senoh A., Mizoguchi H., Goto Y., Shimizu F., Wakebe H., Hishigaki H., Watanabe T., Sugiyama A., Takemoto M., Kawakami B., Yamazaki M., Watanabe K., Kumagai A., Itakura S., Fukuzumi Y., Fujimori Y., Komiyama M., Tashiro H., Tanigami A., Fujiwara T., Ono T., Yamada K., Fujii Y., Ozaki K., Hirao M., Ohmori Y., Kawabata A., Hikiji T., Kobatake N., Inagaki H., Ikema Y., Okamoto S., Okitani R., Kawakami T., Noguchi S., Itoh T., Shigeta K., Senba T., Matsumura K., Nakajima Y., Mizuno T., Morinaga M., Sasaki M., Togashi T., Oyama M., Hata H., Watanabe M., Komatsu T., Mizushima-Sugano J., Satoh T., Shirai Y., Takahashi Y., Nakagawa K., Okumura K., Nagase T., Nomura N., Kikuchi H., Masuho Y., Yamashita R., Nakai K., Yada T., Nakamura Y., Ohara O., Isogai T., Sugano S.
    Nat. Genet. 36:40-45(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 3).
    Tissue: Lung and Trachea.
  2. "The DNA sequence and biological annotation of human chromosome 1."
    Gregory S.G., Barlow K.F., McLay K.E., Kaul R., Swarbreck D., Dunham A., Scott C.E., Howe K.L., Woodfine K., Spencer C.C.A., Jones M.C., Gillson C., Searle S., Zhou Y., Kokocinski F., McDonald L., Evans R., Phillips K.
    , Atkinson A., Cooper R., Jones C., Hall R.E., Andrews T.D., Lloyd C., Ainscough R., Almeida J.P., Ambrose K.D., Anderson F., Andrew R.W., Ashwell R.I.S., Aubin K., Babbage A.K., Bagguley C.L., Bailey J., Beasley H., Bethel G., Bird C.P., Bray-Allen S., Brown J.Y., Brown A.J., Buckley D., Burton J., Bye J., Carder C., Chapman J.C., Clark S.Y., Clarke G., Clee C., Cobley V., Collier R.E., Corby N., Coville G.J., Davies J., Deadman R., Dunn M., Earthrowl M., Ellington A.G., Errington H., Frankish A., Frankland J., French L., Garner P., Garnett J., Gay L., Ghori M.R.J., Gibson R., Gilby L.M., Gillett W., Glithero R.J., Grafham D.V., Griffiths C., Griffiths-Jones S., Grocock R., Hammond S., Harrison E.S.I., Hart E., Haugen E., Heath P.D., Holmes S., Holt K., Howden P.J., Hunt A.R., Hunt S.E., Hunter G., Isherwood J., James R., Johnson C., Johnson D., Joy A., Kay M., Kershaw J.K., Kibukawa M., Kimberley A.M., King A., Knights A.J., Lad H., Laird G., Lawlor S., Leongamornlert D.A., Lloyd D.M., Loveland J., Lovell J., Lush M.J., Lyne R., Martin S., Mashreghi-Mohammadi M., Matthews L., Matthews N.S.W., McLaren S., Milne S., Mistry S., Moore M.J.F., Nickerson T., O'Dell C.N., Oliver K., Palmeiri A., Palmer S.A., Parker A., Patel D., Pearce A.V., Peck A.I., Pelan S., Phelps K., Phillimore B.J., Plumb R., Rajan J., Raymond C., Rouse G., Saenphimmachak C., Sehra H.K., Sheridan E., Shownkeen R., Sims S., Skuce C.D., Smith M., Steward C., Subramanian S., Sycamore N., Tracey A., Tromans A., Van Helmond Z., Wall M., Wallis J.M., White S., Whitehead S.L., Wilkinson J.E., Willey D.L., Williams H., Wilming L., Wray P.W., Wu Z., Coulson A., Vaudin M., Sulston J.E., Durbin R.M., Hubbard T., Wooster R., Dunham I., Carter N.P., McVean G., Ross M.T., Harrow J., Olson M.V., Beck S., Rogers J., Bentley D.R.
    Nature 441:315-321(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
  3. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 16-545 (ISOFORM 2), VARIANT ALA-16.
    Tissue: Lung.
  4. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] OF 517-848 (ISOFORM 1), VARIANT GLN-832.
    Tissue: Testis.

Entry informationi

Entry nameiWDR78_HUMAN
AccessioniPrimary (citable) accession number: Q5VTH9
Secondary accession number(s): A8K9W5
, B5MDT3, H7BY80, Q5VTI0, Q8N5G5, Q9H5R9, Q9UF44
Entry historyi
Integrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: December 7, 2004
Last modified: May 11, 2016
This is version 113 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Human chromosome 1
    Human chromosome 1: entries, gene names and cross-references to MIM
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.