Reviewed, UniProtKB/Swiss-Prot Q5VR07 (C3H1_ORYSJ)

Names and origin

Protein names

Recommended name:
    Zinc finger CCCH domain-containing protein 1
      Short name=OsC3H1

Gene names

Ordered Locus Names:	Os01g0174600, LOC_Os01g07930
ORF Names:	OSJNBa0089K24.23

Organism

Oryza sativa subsp. japonica (Rice)

Taxonomic identifier

39947 [NCBI]

Taxonomic lineage

Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliophyta › Liliopsida › Poales › Poaceae › BEP clade › Ehrhartoideae › Oryzeae › Oryza

Protein attributes

Sequence length	279 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 2 C3H1-type zinc fingers.

Ontologies

Keywords
Domain	Repeat Zinc-finger
Ligand	DNA-binding Metal-binding Zinc
Gene Ontology (GO)
Molecular function	DNA binding Inferred from electronic annotation. Source: UniProtKB-KW zinc ion binding Inferred from electronic annotation. Source: UniProtKB-KW
Complete GO annotation...

Sequence annotation (Features)

	Feature key	Position(s)	Length	Description	Graphical view	Feature identifier
Molecule processing
	Chain	1 – 279	279	Zinc finger CCCH domain-containing protein 1		PRO_0000346800
Regions
	Zinc finger	56 – 84	29	C3H1-type 1
	Zinc finger	139 – 167	29	C3H1-type 2

Sequences

	Sequence		Length	Mass (Da)
	Q5VR07-1 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: 2D5FB42FFA4C1FEF	FASTA	279	29,861
	10 20 30 40 50 60 MAGRGGMVEW EVGRRRDSED VIVLSPGPPA RRRPPPVKAV EPESGGFAYE PPEKLFYKTR 70 80 90 100 110 120 VCETFVTSGR CMFEDGCTFA HGDEELRPSL TACAGGWRKP SPSLSAAAPP VAVAPTPPPA 130 140 150 160 170 180 QVVHELLARG SGSGGGGHRA ITKVCFEFRD KGICYFGETC AFPHVSAAEI RQGSRLSSMS 190 200 210 220 230 240 SSSWEMPARR SVAVTVPRTF VSVPPVAPPP PPPHYRVNNS SSYNAASMAA AAPAASDANL 250 260 270 VAQQPPPEQG GRKMTRLEML SLKKMTGIYG DWLEGYEHP

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The genome sequence and structure of rice chromosome 1." Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y., Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H., Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M. , Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S., Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H., Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S., Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y., Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H., Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T. Nature 420:312-316(2002) [PubMed: 12447438] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[2]	"The map-based sequence of the rice genome." International rice genome sequencing project (IRGSP) Nature 436:793-800(2005) [PubMed: 16100779] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: cv. Nipponbare.
[3]	"Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana." The rice annotation project (RAP) Genome Res. 17:175-183(2007) [PubMed: 17210932] [Abstract] Cited for: GENOME REANNOTATION. Strain: cv. Nipponbare.
[4]	"Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice." The rice full-length cDNA consortium Science 301:376-379(2003) [PubMed: 12869764] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Strain: cv. Nipponbare.
[5]	"Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice." Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C. BMC Genomics 9:44-44(2008) [PubMed: 18221561] [Abstract] Cited for: NOMENCLATURE.

Cross-references

Sequence databases
EMBLGenBankDDBJ	AP003215 Genomic DNA. Translation: BAD68121.1. AP008207 Genomic DNA. Translation: BAF04079.1. AK107662 mRNA. No translation available.
RefSeq	NP_001042165.1.
UniGene	Os.74835
3D structure databases
HSSP	HSSP built from PDB template 1M9O based on UniProtKB P22893.
ModBase	Search...
Genome annotation databases
GeneID	4327128.
KEGG	osa:4327128.
Organism-specific databases
Gramene	Q5VR07.
Phylogenomic databases
HOGENOM	HBG591995.
Family and domain databases
InterPro	IPR000571. Znf_CCCH. [Graphical view]
Pfam	PF00642. zf-CCCH. 2 hits. [Graphical view]
SMART	SM00356. ZnF_C3H1. 2 hits. [Graphical view]
PROSITE	PS50103. ZF_C3H1. 2 hits. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

C3H1_ORYSJ

Accession

Primary (citable) accession number: Q5VR07

Entry history

Integrated into UniProtKB/Swiss-Prot:	September 2, 2008
Last sequence update:	December 7, 2004
Last modified:	December 15, 2009
This is version 32 of the entry and version 1 of the sequence. [Complete history]

Entry status

Reviewed (UniProtKB/Swiss-Prot)

Annotation project

PPAP (Plant Proteome Annotation Project)