Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

Q5VN06

- Q5VN06_ORYSJ

UniProt

Q5VN06 - Q5VN06_ORYSJ

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name:

Os06g0275500 protein

Gene

P0676F10.40

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. chromatin binding Source: InterPro
  2. histone-lysine N-methyltransferase activity Source: EnsemblPlants/Gramene
  3. sequence-specific DNA binding transcription factor activity Source: EnsemblPlants/Gramene
  4. single-stranded RNA binding Source: EnsemblPlants/Gramene

GO - Biological processi

  1. cell differentiation Source: EnsemblPlants/Gramene
  2. DNA mediated transformation Source: EnsemblPlants/Gramene
  3. DNA methylation Source: EnsemblPlants/Gramene
  4. flower development Source: EnsemblPlants/Gramene
  5. gene silencing by RNA Source: EnsemblPlants/Gramene
  6. histone H3-K9 methylation Source: EnsemblPlants/Gramene
  7. leaf morphogenesis Source: EnsemblPlants/Gramene
  8. negative regulation of molecular function, epigenetic Source: EnsemblPlants/Gramene
  9. regulation of gene expression by genetic imprinting Source: EnsemblPlants/Gramene
  10. transcription, DNA-templated Source: EnsemblPlants/Gramene
  11. vegetative to reproductive phase transition of meristem Source: EnsemblPlants/Gramene
  12. vernalization response Source: EnsemblPlants/Gramene
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Os06g0275500 proteinImported
Submitted name:
Putative Polycomb protein EZ1Imported
Gene namesi
Name:P0676F10.40Imported
Synonyms:P0038C05.29Imported
Ordered Locus Names:Os06g0275500Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBEP cladeEhrhartoideaeOryzeaeOryza
ProteomesiUP000000763: Chromosome 6

Subcellular locationi

GO - Cellular componenti

  1. PcG protein complex Source: EnsemblPlants/Gramene
Complete GO annotation...

Expressioni

Gene expression databases

ExpressionAtlasiQ5VN06. baseline.

Structurei

3D structure databases

ProteinModelPortaliQ5VN06.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 1 SET domain.UniRule annotation
Contains SET domain.SAAS annotation

Phylogenomic databases

InParanoidiQ5VN06.
KOiK11430.
OMAiWKSAGYH.

Family and domain databases

InterProiIPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view]
PfamiPF00856. SET. 1 hit.
[Graphical view]
SMARTiSM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view]
PROSITEiPS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5VN06-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAGDSRNEPM FCEEGSSESG YVLCVIDSLK KKITSDRFVY IQKRVEENSI
60 70 80 90 100
KLSPITLHSH NLSKNRQTST SNSTDLVSNL LTKRKEDALC AVNSRESSPD
110 120 130 140 150
ESEGANCQDE CSSTVIVGGN LSARNSVRPI RLPEVATLPP YTTWIFLDRN
160 170 180 190 200
QRMQEDQSVL GRRRIYYDTN CGEALICSDS EDEAVEDEEE KKEFKDSEDC
210 220 230 240 250
IIRMTIQECG MSDAVLETLA RDIERAPDDI KARYEILQGE KPEGSSKKVS
260 270 280 290 300
ELNVKMEDVY GDKDLDAALD SFDNLFCRRC LVFDCKLHGC SQDLVFPTEK
310 320 330 340 350
QAPLCSSDEG TPCGIHCYKL VSKPDAIMEI DSHLLVDVEE PTSDNLKDQI
360 370 380 390 400
GSNKKKLGSS GQKTKSQQSE SSSTARVSSE SSESEVQLLS NKSPQHSPGL
410 420 430 440 450
SKNKLGAKGG IKKSTNRRIA ERILMSVKKG QQEMSPDSNS IVNGCHWPRD
460 470 480 490 500
MKLRSDTRSG IKDSVVSSQC NSPSTRSFRK KGTLQMENNS SFVDAQSDSM
510 520 530 540 550
EDTNNEHSAT DGCDSSRKEE CVDESICRQE AHGRSWKVIE QGLLLKGLEI
560 570 580 590 600
FGKNSCLIAR NLLGGMKTCT DVFQYMNYIE NSSASGALSG VDSLVKGYMK
610 620 630 640 650
GNELRTRSRF VRRRGRVRRL KYTWKTAGYH FIRKRITERK DQPCRQYTPC
660 670 680 690 700
GCQSACGKQC PCLTNGTCCE KYCGCPKMCK NRFRGCHCAK SQCRSRQCPC
710 720 730 740 750
FAADRECDPD VCRNCWVGCG DGTLGVPNQR GDNYECRNMK LLLKQQQRVL
760 770 780 790 800
LGRSDVSGWG AFLKNSVGKH EYLGEYTGEL ISHKEADKRG KIYDRENSSF
810 820 830 840 850
LFNLNNEYVL DAYRMGDKLK FANHSPDPNC YAKVIMVAGD HRVGIFAKER
860 870 880 890
ISAGEELFYD YRYEPDRAPA WARKPEGPGA KDDAQPSTGR AKKLAH
Length:896
Mass (Da):100,296
Last modified:December 7, 2004 - v1
Checksum:i7DCE38E04E7505DF
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP003044 Genomic DNA. Translation: BAD68028.1.
AP005813 Genomic DNA. Translation: BAD69169.1.
AP008212 Genomic DNA. Translation: BAF19293.1.
RefSeqiNP_001057379.1. NM_001063914.1.
UniGeneiOs.44686.

Genome annotation databases

EnsemblPlantsiOS06T0275500-01; OS06T0275500-01; OS06G0275500.
GeneIDi4340748.
KEGGiosa:4340748.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP003044 Genomic DNA. Translation: BAD68028.1 .
AP005813 Genomic DNA. Translation: BAD69169.1 .
AP008212 Genomic DNA. Translation: BAF19293.1 .
RefSeqi NP_001057379.1. NM_001063914.1.
UniGenei Os.44686.

3D structure databases

ProteinModelPortali Q5VN06.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblPlantsi OS06T0275500-01 ; OS06T0275500-01 ; OS06G0275500 .
GeneIDi 4340748.
KEGGi osa:4340748.

Phylogenomic databases

InParanoidi Q5VN06.
KOi K11430.
OMAi WKSAGYH.

Gene expression databases

ExpressionAtlasi Q5VN06. baseline.

Family and domain databases

InterProi IPR026489. CXC_dom.
IPR025778. Hist-Lys_N-MeTrfase_EZ.
IPR001005. SANT/Myb.
IPR001214. SET_dom.
[Graphical view ]
Pfami PF00856. SET. 1 hit.
[Graphical view ]
SMARTi SM00717. SANT. 1 hit.
SM00317. SET. 1 hit.
[Graphical view ]
PROSITEi PS51633. CXC. 1 hit.
PS51576. SAM_MT43_EZ. 1 hit.
PS50280. SET. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, PAC clone:P0038C05."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (DEC-2000) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  2. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6, PAC clone:P0676F10."
    Sasaki T., Matsumoto T., Yamamoto K.
    Submitted (OCT-2002) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  3. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: cv. NipponbareImported.
  4. "The map-based sequence of the rice genome."
    International Rice Genome Sequencing Project
    Matsumoto T., Wu J., Kanamori H., Katayose Y., Fujisawa M., Namiki N., Mizuno H., Yamamoto K., Antonio B.A., Baba T., Sakata K., Nagamura Y., Aoki H., Arikawa K., Arita K., Bito T., Chiden Y., Fujitsuka N.
    , Fukunaka R., Hamada M., Harada C., Hayashi A., Hijishita S., Honda M., Hosokawa S., Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito K., Ito S., Ito T., Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Kurita K., Katagiri S., Kikuta A., Kobayashi H., Kobayashi N., Machita K., Maehara T., Masukawa M., Mizubayashi T., Mukai Y., Nagasaki H., Nagata Y., Naito S., Nakashima M., Nakama Y., Nakamichi Y., Nakamura M., Meguro A., Negishi M., Ohta I., Ohta T., Okamoto M., Ono N., Saji S., Sakaguchi M., Sakai K., Shibata M., Shimokawa T., Song J., Takazaki Y., Terasawa K., Tsugane M., Tsuji K., Ueda S., Waki K., Yamagata H., Yamamoto M., Yamamoto S., Yamane H., Yoshiki S., Yoshihara R., Yukawa K., Zhong H., Yano M., Yuan Q., Ouyang S., Liu J., Jones K.M., Gansberger K., Moffat K., Hill J., Bera J., Fadrosh D., Jin S., Johri S., Kim M., Overton L., Reardon M., Tsitrin T., Vuong H., Weaver B., Ciecko A., Tallon L., Jackson J., Pai G., Aken S.V., Utterback T., Reidmuller S., Feldblyum T., Hsiao J., Zismann V., Iobst S., de Vazeille A.R., Buell C.R., Ying K., Li Y., Lu T., Huang Y., Zhao Q., Feng Q., Zhang L., Zhu J., Weng Q., Mu J., Lu Y., Fan D., Liu Y., Guan J., Zhang Y., Yu S., Liu X., Zhang Y., Hong G., Han B., Choisne N., Demange N., Orjeda G., Samain S., Cattolico L., Pelletier E., Couloux A., Segurens B., Wincker P., D'Hont A., Scarpelli C., Weissenbach J., Salanoubat M., Quetier F., Yu Y., Kim H.R., Rambo T., Currie J., Collura K., Luo M., Yang T., Ammiraju J.S.S., Engler F., Soderlund C., Wing R.A., Palmer L.E., de la Bastide M., Spiegel L., Nascimento L., Zutavern T., O'Shaughnessy A., Dike S., Dedhia N., Preston R., Balija V., McCombie W.R., Chow T., Chen H., Chung M., Chen C., Shaw J., Wu H., Hsiao K., Chao Y., Chu M., Cheng C., Hour A., Lee P., Lin S., Lin Y., Liou J., Liu S., Hsing Y., Raghuvanshi S., Mohanty A., Bharti A.K., Gaur A., Gupta V., Kumar D., Ravi V., Vij S., Kapur A., Khurana P., Khurana P., Khurana J.P., Tyagi A.K., Gaikwad K., Singh A., Dalal V., Srivastava S., Dixit A., Pal A.K., Ghazi I.A., Yadav M., Pandit A., Bhargava A., Sureshbabu K., Batra K., Sharma T.R., Mohapatra T., Singh N.K., Messing J., Nelson A.B., Fuks G., Kavchok S., Keizer G., Linton E., Llaca V., Song R., Tanyolac B., Young S., Ho-Il K., Hahn J.H., Sangsakoo G., Vanavichit A., de Mattos Luiz.A.T., Zimmer P.D., Malone G., Dellagostin O., de Oliveira A.C., Bevan M., Bancroft I., Minx P., Cordum H., Wilson R., Cheng Z., Jin W., Jiang J., Leong S.A., Iwama H., Gojobori T., Itoh T., Niimura Y., Fujii Y., Habara T., Sakai H., Sato Y., Wilson G., Kumar K., McCouch S., Juretic N., Hoen D., Wright S., Bruskiewich R., Bureau T., Miyao A., Hirochika H., Nishikawa T., Kadowaki K., Sugiura M., Burr B., Sasaki T.
    Nature 436:793-800(2005)
    Cited for: NUCLEOTIDE SEQUENCE.
  5. "Oryza sativa nipponbare(GA3) genomic DNA, chromosome 6."
    IRGSP(International Rice Genome Sequencing Project)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  6. "The Second Rice Annotation Project Meeting (RAP2)."
    The Rice Annotation Project (RAP)
    Submitted (FEB-2005) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
  7. "The Rice Annotation Project Database (RAP-DB): hub for Oryza sativa ssp. japonica genome information."
    Ohyanagi H., Tanaka T., Sakai H., Shigemoto Y., Yamaguchi K., Habara T., Fujii Y., Antonio B.A., Nagamura Y., Imanishi T., Ikeo K., Itoh T., Gojobori T., Sasaki T.
    Nucleic Acids Res. 34:D741-D744(2006) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE.
  8. "Curated Genome Annotation of Oryza sativa ssp. japonica and Comparative Genome Analysis with Arabidopsis thaliana."
    The Rice Annotation Project (RAP)
    Itoh T., Tanaka T., Barrero R.A., Yamasaki C., Fujii Y., Hilton P.B., Antonio B.A., Aono H., Apweiler R., Bruskiewich R., Bureau T., Burr F., Costa de Oliveira A., Fuks G., Habara T., Haberer G., Han B., Harada E.
    , Hiraki A.T., Hirochika H., Hoen D., Hokari H., Hosokawa S., Hsing Y., Ikawa H., Ikeo K., Imanishi T., Ito Y., Jaiswal P., Kanno M., Kawahara Y., Kawamura T., Kawashima H., Khurana J.P., Kikuchi S., Komatsu S., Koyanagi K.O., Kubooka H., Lieberherr D., Lin Y.C., Lonsdale D., Matsumoto T., Matsuya A., McCombie W.R., Messing J., Miyao A., Mulder N., Nagamura Y., Nam J., Namiki N., Numa H., Nurimoto S., O'donovan C., Ohyanagi H., Okido T., Oota S., Osato N., Palmer L.E., Quetier F., Raghuvanshi S., Saichi N., Sakai H., Sakai Y., Sakata K., Sakurai T., Sato F., Sato Y., Schoof H., Seki M., Shibata M., Shimizu Y., Shinozaki K., Shinso Y., Singh N.K., Smith-White B., Takeda J., Tanino M., Tatusova T., Thongjuea S., Todokoro F., Tsugane M., Tyagi A.K., Vanavichit A., Wang A., Wing R.A., Yamaguchi K., Yamamoto M., Yamamoto N., Yu Y., Zhang H., Zhao Q., Higo K., Burr B., Gojobori T., Sasaki T.
    Genome Res. 17:175-183(2007)
    Cited for: NUCLEOTIDE SEQUENCE.
  9. "The Rice Annotation Project Database (RAP-DB): 2008 update."
    The Rice Annotation Project (RAP)
    Tanaka T., Antonio B.A., Kikuchi S., Matsumoto T., Nagamura Y., Numa H., Sakai H., Wu J., Itoh T., Sasaki T., Aono R., Fujii Y., Habara T., Harada E., Kanno M., Kawahara Y., Kawashima H., Kubooka H.
    , Matsuya A., Nakaoka H., Saichi N., Sanbonmatsu R., Sato Y., Shinso Y., Suzuki M., Takeda J., Tanino M., Todokoro F., Yamaguchi K., Yamamoto N., Yamasaki C., Imanishi T., Okido T., Tada M., Ikeo K., Tateno Y., Gojobori T., Lin Y.C., Wei F.J., Hsing Y.I., Zhao Q., Han B., Kramer M.R., McCombie R.W., Lonsdale D., O'Donovan C.C., Whitfield E.J., Apweiler R., Koyanagi K.O., Khurana J.P., Raghuvanshi S., Singh N.K., Tyagi A.K., Haberer G., Fujisawa M., Hosokawa S., Ito Y., Ikawa H., Shibata M., Yamamoto M., Bruskiewich R.M., Hoen D.R., Bureau TE., Namiki N., Ohyanagi H., Sakai Y., Nobushima S., Sakata K., Barrero R.A., Sato Y., Souvorov A., Smith-White B., Tatusova T., An S., An G., OOta S., Fuks G., Messing J., Christie K.R., Lieberherr D., Kim H., Zuccolo A., Wing R.A., Nobuta K., Green P.J., Lu C., Meyers BC., Chaparro C., Piegu B., Panaud O., Echeverria M.
    Nucleic Acids Res. 36:D1028-D1033(2008)
    Cited for: NUCLEOTIDE SEQUENCE.
  10. "The rice annotation project database (RAP-DB): 2008 update."
    The rice annotation project (RAP)
    Nucleic Acids Res. 36:D1028-D1033(2008) [PubMed] [Europe PMC] [Abstract]
    Cited for: GENOME REANNOTATION.
    Strain: cv. NipponbareImported.

Entry informationi

Entry nameiQ5VN06_ORYSJ
AccessioniPrimary (citable) accession number: Q5VN06
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: October 29, 2014
This is version 73 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3