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Protein
Submitted name:

Transcription regulator

Gene

tetR

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

Complete GO annotation...

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-3470-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Transcription regulatorImported
Gene namesi
Name:tetRImported
Ordered Locus Names:pNG7308Imported
Encoded oniPlasmid pNG700Imported
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)Imported
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Plasmid pNG700

Structurei

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3CRJX-ray2.60A/B/C/D1-196[»]
ProteinModelPortaliQ5V649.
SMRiQ5V649. Positions 7-196.
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ5V649.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini10 – 7061HTH tetR-type DNA-bindingInterPro annotationAdd
BLAST

Phylogenomic databases

HOGENOMiHOG000038237.
OMAiMRSQAPY.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5V649-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGPSDRTFS DQTEEIMQAT YRALREHGYA DLTIQRIADE YGKSTAAVHY
60 70 80 90 100
YYDTKDDLLA AFLDYLLERF VDSIHDVETT DPEARLNLLL DELLVKPQEN
110 120 130 140 150
PDLSVALLEM RSQAPYKEAF SDRFRQNDEY VRYMLKAVIN HGIDEGVFTD
160 170 180 190
VDAEHVTRSL LTIIDGARTR AVMLDDTEEL ETARQTASEY ADAMLQ
Length:196
Mass (Da):22,440
Last modified:December 7, 2004 - v1
Checksum:i0491F9C7C1853F25
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596296 Genomic DNA. Translation: AAV45003.1.
RefSeqiWP_004966015.1. NC_006395.1.

Genome annotation databases

EnsemblBacteriaiAAV45003; AAV45003; pNG7308.
GeneIDi3127151.
KEGGihma:pNG7308.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596296 Genomic DNA. Translation: AAV45003.1.
RefSeqiWP_004966015.1. NC_006395.1.

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
EntryMethodResolution (Å)ChainPositionsPDBsum
3CRJX-ray2.60A/B/C/D1-196[»]
ProteinModelPortaliQ5V649.
SMRiQ5V649. Positions 7-196.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV45003; AAV45003; pNG7308.
GeneIDi3127151.
KEGGihma:pNG7308.

Phylogenomic databases

HOGENOMiHOG000038237.
OMAiMRSQAPY.

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-3470-MONOMER.

Miscellaneous databases

EvolutionaryTraceiQ5V649.

Family and domain databases

Gene3Di1.10.357.10. 1 hit.
InterProiIPR009057. Homeodomain-like.
IPR001647. HTH_TetR.
IPR015893. Tet_transcr_reg_TetR-like_C.
IPR011075. Tet_transcr_reg_TetR-rel_C.
[Graphical view]
PfamiPF00440. TetR_N. 1 hit.
[Graphical view]
SUPFAMiSSF46689. SSF46689. 1 hit.
SSF48498. SSF48498. 1 hit.
PROSITEiPS50977. HTH_TETR_2. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809Imported.
  2. "The crystal structure of a TetR transcription regulator from Haloarcula marismortui ATCC 43049."
    Tan K., Zhou M., Freeman L., Joachimiak A.
    Submitted (APR-2008) to the PDB data bank
    Cited for: X-RAY CRYSTALLOGRAPHY (2.60 ANGSTROMS).

Entry informationi

Entry nameiQ5V649_HALMA
AccessioniPrimary (citable) accession number: Q5V649
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: December 9, 2015
This is version 70 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

3D-structureCombined sources, Complete proteome, PlasmidImported, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.