Q5V352 (Q5V352_HALMA) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
DNA-3-methyladenine glycosylase EMBL AAV46050.1

Gene names

Name:	alkA EMBL AAV46050.1
Ordered Locus Names:	rrnAC1088

Organism

Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui) [Complete proteome] [HAMAP] EMBL AAV46050.1

Taxonomic identifier

272569 [NCBI]

Taxonomic lineage

Archaea › Euryarchaeota › Halobacteria › Halobacteriales › Halobacteriaceae › Haloarcula

Protein attributes

Sequence length	203 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome
Gene Ontology (GO)
Biological process	base-excision repair Inferred from electronic annotation. Source: InterPro
Molecular function	catalytic activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5V352 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: 85B5210F90D5C4D8	FASTA	203	22,590
	10 20 30 40 50 60 MSDSPHEVLR ADPDIGPLVE THGELTLDPA SDLFERLVVS ILRQQVSMAS AAATRERLFD 70 80 90 100 110 120 AVTVTPAGIK DADNDLLRDA GLSRQKTRYV NEVADAFLEH GYSLEAFEDA ADEEIHEELT 130 140 150 160 170 180 AITGVGDWTA NMQLLFAFGR KDVFPVGDLG IRKGFEAVVG DGYSRAEMRE YAERWSPYRS 190 200 YASLYLWRAS EDIAESVAEV RED

References

[1]

"Genome sequence of Haloarcula marismortui: a halophilic archaeon from the Dead Sea." Baliga N.S., Bonneau R., Facciotti M.T., Pan M., Glusman G., Deutsch E.W., Shannon P., Chiu Y., Weng R.S., Gan R.R., Hung P., Date S.V., Marcotte E., Hood L., Ng W.V. Genome Res. 14:2221-2234(2004) [PubMed: 15520287] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AY596297 Genomic DNA. Translation: AAV46050.1.
RefSeq	YP_135756.1. NC_006396.1.
3D structure databases
ProteinModelPortal	Q5V352.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
GeneID	3127942.
GenomeReviews	Gene locus rrnAC1088 in contig AY596297_GR.
KEGG	hma:rrnAC1088.
NMPDR	fig|272569.1.peg.1025.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HBG544181.
OMA	YLWRAAD.
PhylomeDB	Q5V352.
ProtClustDB	CLSK296068.
Family and domain databases
InterPro	IPR011257. DNA_glycosylase. IPR003265. HhH-GPD_domain. IPR023170. HTH_base_excis_C. [Graphical view]
Gene3D	G3DSA:1.10.340.30. DNA_glycosylase. 1 hit. G3DSA:1.10.1670.10. HTH_base_excis_C. 1 hit.
KO	K01247.
Pfam	PF00730. HhH-GPD. 1 hit. [Graphical view]
SMART	SM00478. ENDO3c. 1 hit. [Graphical view]
SUPFAM	SSF48150. DNA_glycsylse. 1 hit.
ProtoNet	Search...

Entry information

Entry name

Q5V352_HALMA

Accession

Primary (citable) accession number: Q5V352

Entry history

Integrated into UniProtKB/TrEMBL:	December 7, 2004
Last sequence update:	December 7, 2004
Last modified:	December 14, 2011
This is version 42 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)