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Protein

Putative HTH-type transcriptional regulatory protein rrnAC2519

Gene

rrnAC2519

Organism
Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Status
Reviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
DNA bindingi143 – 16220H-T-H motifUniRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Biological processi

Transcription, Transcription regulation

Keywords - Ligandi

DNA-binding

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-2278-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Putative HTH-type transcriptional regulatory protein rrnAC2519UniRule annotation
Gene namesi
Ordered Locus Names:rrnAC2519
OrganismiHaloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) (Halobacterium marismortui)
Taxonomic identifieri272569 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloarcula
Proteomesi
  • UP000001169 Componenti: Chromosome I

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 322322Putative HTH-type transcriptional regulatory protein rrnAC2519PRO_0000259355Add
BLAST

Interactioni

Protein-protein interaction databases

STRINGi272569.rrnAC2519.

Structurei

3D structure databases

ProteinModelPortaliQ5UZI1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini132 – 18958HTH cro/C1-typeUniRule annotationAdd
BLAST

Sequence similaritiesi

Contains 1 HTH cro/C1-type DNA-binding domain.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5UZI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSRSALVENV MAMLEDAGFL VSDRCAIRPK SFDIAARRGE DVLLLKILGN
60 70 80 90 100
IDAFDAQTGG EMRRLGTYLN ATPIVIGLRT RDEELKPGVV YFRHGVPVLS
110 120 130 140 150
PDTAMDLFVE EVPPLIYAAP GGLYVNIDSE ILADVREDRD WSLGRLAKEL
160 170 180 190 200
GVSRRTVSKY EDGMDASVEV AAELEDLFDA PLTSPVSVLD GAEEVRDDEP
210 220 230 240 250
TPDDPDVAPE DEPIVTVFTR IGFEVHPTDR APFKSVNESD DEHGQVLAGH
260 270 280 290 300
SAFTETAEKR ARIMSSVGEV TRTRSVYVVD ELRRESVEGT ALIEKEEMEN
310 320
IEDAIDLRDL IMERGEDREE VA
Length:322
Mass (Da):35,622
Last modified:December 7, 2004 - v1
Checksum:i4665BB5BC727F77E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA. Translation: AAV47322.1.
RefSeqiWP_011224273.1. NC_006396.1.

Genome annotation databases

EnsemblBacteriaiAAV47322; AAV47322; rrnAC2519.
GeneIDi3129050.
KEGGihma:rrnAC2519.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY596297 Genomic DNA. Translation: AAV47322.1.
RefSeqiWP_011224273.1. NC_006396.1.

3D structure databases

ProteinModelPortaliQ5UZI1.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi272569.rrnAC2519.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiAAV47322; AAV47322; rrnAC2519.
GeneIDi3129050.
KEGGihma:rrnAC2519.

Phylogenomic databases

eggNOGiarCOG04152. Archaea.
COG1395. LUCA.
HOGENOMiHOG000230106.
KOiK07728.
OMAiGVVYFRH.

Enzyme and pathway databases

BioCyciHMAR272569:GJDH-2278-MONOMER.

Family and domain databases

Gene3Di1.10.260.40. 1 hit.
HAMAPiMF_00584. HTH_type_cro_C1.
InterProiIPR001387. Cro/C1-type_HTH.
IPR010982. Lambda_DNA-bd_dom.
IPR020886. Tscrpt_reg_HTH_Cro/C1.
[Graphical view]
PfamiPF01381. HTH_3. 1 hit.
[Graphical view]
SMARTiSM00530. HTH_XRE. 1 hit.
[Graphical view]
SUPFAMiSSF47413. SSF47413. 1 hit.
PROSITEiPS50943. HTH_CROC1. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809.

Entry informationi

Entry nameiY2519_HALMA
AccessioniPrimary (citable) accession number: Q5UZI1
Entry historyi
Integrated into UniProtKB/Swiss-Prot: October 31, 2006
Last sequence update: December 7, 2004
Last modified: November 11, 2015
This is version 69 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.