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Protein

Protein FAR1-RELATED SEQUENCE 1

Gene

FRS1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Putative transcription activator involved in regulating light control of development.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri440 – 476SWIM-typePROSITE-ProRule annotationAdd BLAST37

GO - Molecular functioni

GO - Biological processi

Keywordsi

LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAR1-RELATED SEQUENCE 1
Gene namesi
Name:FRS1
Ordered Locus Names:At4g19990
ORF Names:F18F4.90
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

AraportiAT4G19990

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003634791 – 687Protein FAR1-RELATED SEQUENCE 1Add BLAST687

Proteomic databases

PaxDbiQ5UBY2
PRIDEiQ5UBY2

Expressioni

Tissue specificityi

Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques.1 Publication

Gene expression databases

ExpressionAtlasiQ5UBY2 baseline and differential
GenevisibleiQ5UBY2 AT

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
FAR1Q9SWG33EBI-625440,EBI-625464

Protein-protein interaction databases

IntActiQ5UBY2, 1 interactor
STRINGi3702.AT4G19990.2

Structurei

3D structure databases

ProteinModelPortaliQ5UBY2
SMRiQ5UBY2
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini35 – 137FAR1Add BLAST103
Domaini211 – 254MULEAdd BLAST44

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili540 – 562Sequence analysisAdd BLAST23

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi365 – 368Poly-Glu4

Sequence similaritiesi

Belongs to the FHY3/FAR1 family.Curated

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri440 – 476SWIM-typePROSITE-ProRule annotationAdd BLAST37

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

eggNOGiENOG410JIW6 Eukaryota
ENOG410ZD4W LUCA
HOGENOMiHOG000090708
InParanoidiQ5UBY2
PhylomeDBiQ5UBY2

Family and domain databases

InterProiView protein in InterPro
IPR004330 FAR1_DNA_bnd_dom
IPR031052 FHY3/FAR1
IPR006564 Znf_PMZ
IPR007527 Znf_SWIM
PANTHERiPTHR31669 PTHR31669, 3 hits
PfamiView protein in Pfam
PF03101 FAR1, 1 hit
PF04434 SWIM, 1 hit
SMARTiView protein in SMART
SM00575 ZnF_PMZ, 1 hit
PROSITEiView protein in PROSITE
PS50966 ZF_SWIM, 1 hit

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q5UBY2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSSGECSNVQ LDDHRKNNLE IDEGREFESK EEAFEFYKEY ANSVGFTTII
60 70 80 90 100
KASRRSRMTG KFIDAKFVCT RYGSKKEDID TGLGTDGFNI PQARKRGRIN
110 120 130 140 150
RSSSKTDCKA FLHVKRRQDG RWVVRSLVKE HNHEIFTGQA DSLRELSGRR
160 170 180 190 200
KLEKLNGAIV KEVKSRKLED GDVERLLNFF TDMQVENPFF FYSIDLSEEQ
210 220 230 240 250
SLRNIFWVDA KAMHGCRPRV ILTKHDQMLK EAVLEVFPSS RHCFYMWDTL
260 270 280 290 300
GQMPEKLGHV IRLEKKLVDE INDAIYGSCQ SEDFEKNWWE VVDRFHMRDN
310 320 330 340 350
VWLQSLYEDR EYWVPVYMKD VSLAGMCTAQ RSDSVNSGLD KYIQRKTTFK
360 370 380 390 400
AFLEQYKKMI QERYEEEEKS EIETLYKQPG LKSPSPFGKQ MAEVYTREMF
410 420 430 440 450
KKFQVEVLGG VACHPKKESE EDGVNKRTFR VQDYEQNRSF VVVWNSESSE
460 470 480 490 500
VVCSCRLFEL KGFLCRHAMI VLQMSGELSI PSQYVLKRWT KDAKSREVME
510 520 530 540 550
SDQTDVESTK AQRYKDLCLR SLKLSEEASL SEESYNAVVN VLNEALRKWE
560 570 580 590 600
NKSNLIQNLE ESESVTAQDL PIHEEQNNTY DMNKDDNVAD TGQEYSLQEV
610 620 630 640 650
WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINSMASNRN GYCSVHQNIH
660 670 680
SLQGQSITHP RLYETEQSSF RPEAMYERLQ DMVKDLN
Length:687
Mass (Da):80,312
Last modified:December 7, 2004 - v1
Checksum:i25059A7477441D64
GO

Sequence cautioni

The sequence CAA16607 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence CAB78999 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY763412 mRNA Translation: AAV33403.1
AL021637 Genomic DNA Translation: CAA16607.1 Sequence problems.
AL161552 Genomic DNA Translation: CAB78999.1 Sequence problems.
CP002687 Genomic DNA No translation available.
PIRiT04883

Genome annotation databases

EnsemblPlantsiAT4G19990.3; AT4G19990.3; AT4G19990
GrameneiAT4G19990.3; AT4G19990.3; AT4G19990

Keywords - Coding sequence diversityi

Alternative splicing

Similar proteinsi

Entry informationi

Entry nameiFRS1_ARATH
AccessioniPrimary (citable) accession number: Q5UBY2
Secondary accession number(s): O49426
Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: December 7, 2004
Last modified: May 23, 2018
This is version 83 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

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