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Protein

Protein FAR1-RELATED SEQUENCE 1

Gene

FRS1

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

Putative transcription activator involved in regulating light control of development.

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri440 – 47637SWIM-typePROSITE-ProRule annotationAdd
BLAST

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
Protein FAR1-RELATED SEQUENCE 1
Gene namesi
Name:FRS1
Ordered Locus Names:At4g19990
ORF Names:F18F4.90
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 4

Organism-specific databases

TAIRiAT4G19990.

Subcellular locationi

  • Nucleus 1 Publication

  • Note: The nuclear localization is independent of the light treatment.

GO - Cellular componenti

Complete GO annotation...

Keywords - Cellular componenti

Nucleus

PTM / Processingi

Molecule processing

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Chaini1 – 687687Protein FAR1-RELATED SEQUENCE 1PRO_0000363479Add
BLAST

Proteomic databases

PaxDbiQ5UBY2.
PRIDEiQ5UBY2.

Expressioni

Tissue specificityi

Expressed in rosette and cauline leaves, inflorescences stems, flowers and siliques.1 Publication

Gene expression databases

ExpressionAtlasiQ5UBY2. baseline and differential.
GenevisibleiQ5UBY2. AT.

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
FAR1Q9SWG33EBI-625440,EBI-625464

Protein-protein interaction databases

IntActiQ5UBY2. 1 interaction.
STRINGi3702.AT4G19990.2.

Structurei

3D structure databases

ProteinModelPortaliQ5UBY2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini35 – 137103FAR1Add
BLAST
Domaini211 – 25444MULEAdd
BLAST

Coiled coil

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Coiled coili540 – 56223Sequence analysisAdd
BLAST

Compositional bias

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Compositional biasi365 – 3684Poly-Glu

Sequence similaritiesi

Belongs to the FHY3/FAR1 family.Curated
Contains 1 FAR1 domain.Curated
Contains 1 MULE domain.Curated
Contains 1 SWIM-type zinc finger.PROSITE-ProRule annotation

Zinc finger

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Zinc fingeri440 – 47637SWIM-typePROSITE-ProRule annotationAdd
BLAST

Keywords - Domaini

Coiled coil, Zinc-finger

Phylogenomic databases

eggNOGiENOG410JIW6. Eukaryota.
ENOG410ZD4W. LUCA.
HOGENOMiHOG000090708.
InParanoidiQ5UBY2.
PhylomeDBiQ5UBY2.

Family and domain databases

InterProiIPR004330. FAR1_DNA_bnd_dom.
IPR031052. FHY3/FAR1.
IPR006564. Znf_PMZ.
IPR007527. Znf_SWIM.
[Graphical view]
PANTHERiPTHR31669. PTHR31669. 1 hit.
PfamiPF03101. FAR1. 1 hit.
PF04434. SWIM. 1 hit.
[Graphical view]
SMARTiSM00575. ZnF_PMZ. 1 hit.
[Graphical view]
PROSITEiPS50966. ZF_SWIM. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

This entry describes 1 isoform i produced by alternative splicing. AlignAdd to basket

Note: A number of isoforms are produced. According to EST sequences.
Isoform 1 (identifier: Q5UBY2-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide

        10         20         30         40         50
MSSGECSNVQ LDDHRKNNLE IDEGREFESK EEAFEFYKEY ANSVGFTTII
60 70 80 90 100
KASRRSRMTG KFIDAKFVCT RYGSKKEDID TGLGTDGFNI PQARKRGRIN
110 120 130 140 150
RSSSKTDCKA FLHVKRRQDG RWVVRSLVKE HNHEIFTGQA DSLRELSGRR
160 170 180 190 200
KLEKLNGAIV KEVKSRKLED GDVERLLNFF TDMQVENPFF FYSIDLSEEQ
210 220 230 240 250
SLRNIFWVDA KAMHGCRPRV ILTKHDQMLK EAVLEVFPSS RHCFYMWDTL
260 270 280 290 300
GQMPEKLGHV IRLEKKLVDE INDAIYGSCQ SEDFEKNWWE VVDRFHMRDN
310 320 330 340 350
VWLQSLYEDR EYWVPVYMKD VSLAGMCTAQ RSDSVNSGLD KYIQRKTTFK
360 370 380 390 400
AFLEQYKKMI QERYEEEEKS EIETLYKQPG LKSPSPFGKQ MAEVYTREMF
410 420 430 440 450
KKFQVEVLGG VACHPKKESE EDGVNKRTFR VQDYEQNRSF VVVWNSESSE
460 470 480 490 500
VVCSCRLFEL KGFLCRHAMI VLQMSGELSI PSQYVLKRWT KDAKSREVME
510 520 530 540 550
SDQTDVESTK AQRYKDLCLR SLKLSEEASL SEESYNAVVN VLNEALRKWE
560 570 580 590 600
NKSNLIQNLE ESESVTAQDL PIHEEQNNTY DMNKDDNVAD TGQEYSLQEV
610 620 630 640 650
WKVTALQEQR NRYSILDDYL SAQHMSHEMG QINSMASNRN GYCSVHQNIH
660 670 680
SLQGQSITHP RLYETEQSSF RPEAMYERLQ DMVKDLN
Length:687
Mass (Da):80,312
Last modified:December 7, 2004 - v1
Checksum:i25059A7477441D64
GO

Sequence cautioni

The sequence CAA16607 differs from that shown. Reason: Erroneous gene model prediction. Curated
The sequence CAB78999 differs from that shown. Reason: Erroneous gene model prediction. Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY763412 mRNA. Translation: AAV33403.1.
AL021637 Genomic DNA. Translation: CAA16607.1. Sequence problems.
AL161552 Genomic DNA. Translation: CAB78999.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE84256.1.
PIRiT04883.
RefSeqiNP_193732.2. NM_118118.2. [Q5UBY2-1]
UniGeneiAt.47952.

Genome annotation databases

EnsemblPlantsiAT4G19990.1; AT4G19990.1; AT4G19990. [Q5UBY2-1]
GeneIDi827744.
KEGGiath:AT4G19990.

Keywords - Coding sequence diversityi

Alternative splicing

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY763412 mRNA. Translation: AAV33403.1.
AL021637 Genomic DNA. Translation: CAA16607.1. Sequence problems.
AL161552 Genomic DNA. Translation: CAB78999.1. Sequence problems.
CP002687 Genomic DNA. Translation: AEE84256.1.
PIRiT04883.
RefSeqiNP_193732.2. NM_118118.2. [Q5UBY2-1]
UniGeneiAt.47952.

3D structure databases

ProteinModelPortaliQ5UBY2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

IntActiQ5UBY2. 1 interaction.
STRINGi3702.AT4G19990.2.

Proteomic databases

PaxDbiQ5UBY2.
PRIDEiQ5UBY2.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT4G19990.1; AT4G19990.1; AT4G19990. [Q5UBY2-1]
GeneIDi827744.
KEGGiath:AT4G19990.

Organism-specific databases

TAIRiAT4G19990.

Phylogenomic databases

eggNOGiENOG410JIW6. Eukaryota.
ENOG410ZD4W. LUCA.
HOGENOMiHOG000090708.
InParanoidiQ5UBY2.
PhylomeDBiQ5UBY2.

Miscellaneous databases

PROiQ5UBY2.

Gene expression databases

ExpressionAtlasiQ5UBY2. baseline and differential.
GenevisibleiQ5UBY2. AT.

Family and domain databases

InterProiIPR004330. FAR1_DNA_bnd_dom.
IPR031052. FHY3/FAR1.
IPR006564. Znf_PMZ.
IPR007527. Znf_SWIM.
[Graphical view]
PANTHERiPTHR31669. PTHR31669. 1 hit.
PfamiPF03101. FAR1. 1 hit.
PF04434. SWIM. 1 hit.
[Graphical view]
SMARTiSM00575. ZnF_PMZ. 1 hit.
[Graphical view]
PROSITEiPS50966. ZF_SWIM. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiFRS1_ARATH
AccessioniPrimary (citable) accession number: Q5UBY2
Secondary accession number(s): O49426
Entry historyi
Integrated into UniProtKB/Swiss-Prot: February 10, 2009
Last sequence update: December 7, 2004
Last modified: September 7, 2016
This is version 65 of the entry and version 1 of the sequence. [Complete history]
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.