Unreviewed, UniProtKB/TrEMBL Q5U4E5 (Q5U4E5_RAT)

Names and origin

Protein names

Submitted name:
    Beta-transducin repeat containing EMBL AAH85125.1

Gene names

Name:

Btrc RGD 1359721

Organism

Rattus norvegicus (Rat) EMBL AAH85125.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	506 AA.
Sequence status	Complete.
Sequence processing	The displayed sequence is not processed.
Protein existence	Evidence at transcript level.

General annotation (Comments)

Sequence similarities

Contains 1 F-box domain. RuleBase RU004534V0

Ontologies

Keywords
Domain	Repeat RuleBase RU003532V3 WD repeat RuleBase RU000362V4
Gene Ontology (GO)
Molecular function	protein binding Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	Q5U4E5-1 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: F6289D4123070AAF	FASTA	506	58,123
	10 20 30 40 50 60 MKTENCVAKT KLANGTSSMI VPKQRKLSAS YEKEKELCVK YFEQWSESDQ VEFVEHLISQ 70 80 90 100 110 120 MCHYQHGHIN SYLKPMLQRD FITALPARGL DHIAENILSY LDARSLCAAE LVCKEWYRVT 130 140 150 160 170 180 SDGMLWKKLI ERMVRTDSLW RGLAERRGWG QYLFKNKPPD ENAPPNSFYR ALYPKIIQDI 190 200 210 220 230 240 ETIESNWRCG RHSLQRIHCR SETSKGVYCL QYDDQKIVSG LRDNTIKIWD KSTLECKRIL 250 260 270 280 290 300 TGHTGSVLCL QYDERVIITG SSDSTVRVWD VNAGEMLNTL IHHCEAVLHL RFNNGMMVTC 310 320 330 340 350 360 SKDRSIAVWD MASPTDITLR RVLVGHRAAV NVVDFDDKYI VSASGDRTIK VWNTSTCEFV 370 380 390 400 410 420 RTLNGHKRGI ACLQYRDRLV VSGSSDNTIR LWDIECGACL RVLEGHEELV RCIRFDNKRI 430 440 450 460 470 480 VSGAYDGKIK VWDLMAALDP RAPAGTLCLR TLVEHSGRVF RLQFDEFQIV SSSHDDTILI 490 500 WDFLNDPATH AEPPRSPSRT YTYISR

References

[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Testis EMBL AAH85125.1.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBLGenBankDDBJ	BC085125 mRNA. Translation: AAH85125.1.
IPI	IPI00372531.
RefSeq	NP_001007149.2.
UniGene	Rn.21800
3D structure databases
ModBase	Search...
Protein-protein interaction databases
STRING	Q5U4E5.
Genome annotation databases
Ensembl	ENSRNOT00000022426; ENSRNOP00000022426; ENSRNOG00000016280; Rattus norvegicus. [Genome view] ENSRNOT00000064259; ENSRNOP00000062209; ENSRNOG00000016280; Rattus norvegicus. [Genome view]
GeneID	361765.
KEGG	rno:361765.
UCSC	NM_001007148. rat.
Organism-specific databases
CTD	361765.
RGD	1359721. Btrc.
Phylogenomic databases
HOVERGEN	Q5U4E5.
Gene expression databases
ArrayExpress	Q5U4E5.
Genevestigator	Q5U4E5.
Family and domain databases
InterPro	IPR001810. F-box. IPR020472. G-protein_beta_WD-40_rep_reg. IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR011046. WD40_repeat-like_dom. IPR019782. WD40_repeat_2. IPR019775. WD40_repeat_CS. IPR017986. WD40_repeat_dom. IPR019781. WD40_repeat_sg. [Graphical view]
Gene3D	G3DSA:2.130.10.10. WD40/YVTN_repeat-like. 1 hit.
Pfam	PF00646. F-box. 1 hit. PF00400. WD40. 7 hits. [Graphical view]
PRINTS	PR00320. GPROTEINBRPT.
ProDom	PD000018. WD40. 5 hits. [Graphical view] [Entries sharing at least one domain]
SMART	SM00256. FBOX. 1 hit. SM00320. WD40. 7 hits. [Graphical view]
PROSITE	PS50181. FBOX. 1 hit. PS00678. WD_REPEATS_1. 6 hits. PS50082. WD_REPEATS_2. 7 hits. PS50294. WD_REPEATS_REGION. 1 hit. [Graphical view]
ProtoNet	Search...
Other Resources
NextBio	677539.

Entry information

Entry name

Q5U4E5_RAT

Accession

Primary (citable) accession number: Q5U4E5

Entry history

Integrated into UniProtKB/TrEMBL:	December 7, 2004
Last sequence update:	December 7, 2004
Last modified:	November 3, 2009
This is version 45 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)