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Protein
Submitted name:

Beta-transducin repeat containing

Gene

Btrc

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Names & Taxonomyi

Protein namesi
Submitted name:
Beta-transducin repeat containingImported
Gene namesi
Name:BtrcImported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Organism-specific databases

RGDi1359721. Btrc.

PTM / Processingi

Proteomic databases

PaxDbiQ5U4E5.
PRIDEiQ5U4E5.

PTM databases

PhosphoSiteiQ5U4E5.

Expressioni

Gene expression databases

GenevisibleiQ5U4E5. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022426.

Structurei

3D structure databases

ProteinModelPortaliQ5U4E5.
SMRiQ5U4E5. Positions 28-482.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini91 – 12939F-boxInterPro annotationAdd
BLAST
Domaini200 – 491292WD_REPEATS_REGIONInterPro annotationAdd
BLAST

Sequence similaritiesi

Contains 1 F-box domain.UniRule annotation

Keywords - Domaini

RepeatUniRule annotation, WD repeatUniRule annotation

Phylogenomic databases

eggNOGiKOG0281. Eukaryota.
ENOG410XTA8. LUCA.
HOGENOMiHOG000006638.
HOVERGENiHBG002521.
KOiK03362.
PhylomeDBiQ5U4E5.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR021977. Beta-TrCP_D.
IPR001810. F-box_dom.
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF12125. Beta-TrCP_D. 1 hit.
PF12937. F-box-like. 1 hit.
PF00400. WD40. 6 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM01028. Beta-TrCP_D. 1 hit.
SM00256. FBOX. 1 hit.
SM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
SSF81383. SSF81383. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
PS00678. WD_REPEATS_1. 6 hits.
PS50082. WD_REPEATS_2. 7 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U4E5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MKTENCVAKT KLANGTSSMI VPKQRKLSAS YEKEKELCVK YFEQWSESDQ
60 70 80 90 100
VEFVEHLISQ MCHYQHGHIN SYLKPMLQRD FITALPARGL DHIAENILSY
110 120 130 140 150
LDARSLCAAE LVCKEWYRVT SDGMLWKKLI ERMVRTDSLW RGLAERRGWG
160 170 180 190 200
QYLFKNKPPD ENAPPNSFYR ALYPKIIQDI ETIESNWRCG RHSLQRIHCR
210 220 230 240 250
SETSKGVYCL QYDDQKIVSG LRDNTIKIWD KSTLECKRIL TGHTGSVLCL
260 270 280 290 300
QYDERVIITG SSDSTVRVWD VNAGEMLNTL IHHCEAVLHL RFNNGMMVTC
310 320 330 340 350
SKDRSIAVWD MASPTDITLR RVLVGHRAAV NVVDFDDKYI VSASGDRTIK
360 370 380 390 400
VWNTSTCEFV RTLNGHKRGI ACLQYRDRLV VSGSSDNTIR LWDIECGACL
410 420 430 440 450
RVLEGHEELV RCIRFDNKRI VSGAYDGKIK VWDLMAALDP RAPAGTLCLR
460 470 480 490 500
TLVEHSGRVF RLQFDEFQIV SSSHDDTILI WDFLNDPATH AEPPRSPSRT

YTYISR
Length:506
Mass (Da):58,123
Last modified:December 7, 2004 - v1
Checksum:iF6289D4123070AAF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085125 mRNA. Translation: AAH85125.1.
RefSeqiNP_001007149.2. NM_001007148.2.
XP_006231601.1. XM_006231539.2.
XP_006231603.1. XM_006231541.2.
XP_006231605.1. XM_006231543.2.
UniGeneiRn.21800.

Genome annotation databases

GeneIDi361765.
KEGGirno:361765.
UCSCiRGD:1359721. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC085125 mRNA. Translation: AAH85125.1.
RefSeqiNP_001007149.2. NM_001007148.2.
XP_006231601.1. XM_006231539.2.
XP_006231603.1. XM_006231541.2.
XP_006231605.1. XM_006231543.2.
UniGeneiRn.21800.

3D structure databases

ProteinModelPortaliQ5U4E5.
SMRiQ5U4E5. Positions 28-482.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000022426.

PTM databases

PhosphoSiteiQ5U4E5.

Proteomic databases

PaxDbiQ5U4E5.
PRIDEiQ5U4E5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi361765.
KEGGirno:361765.
UCSCiRGD:1359721. rat.

Organism-specific databases

CTDi8945.
RGDi1359721. Btrc.

Phylogenomic databases

eggNOGiKOG0281. Eukaryota.
ENOG410XTA8. LUCA.
HOGENOMiHOG000006638.
HOVERGENiHBG002521.
KOiK03362.
PhylomeDBiQ5U4E5.

Miscellaneous databases

NextBioi677539.

Gene expression databases

GenevisibleiQ5U4E5. RN.

Family and domain databases

Gene3Di2.130.10.10. 2 hits.
InterProiIPR021977. Beta-TrCP_D.
IPR001810. F-box_dom.
IPR020472. G-protein_beta_WD-40_rep.
IPR015943. WD40/YVTN_repeat-like_dom.
IPR001680. WD40_repeat.
IPR019775. WD40_repeat_CS.
IPR017986. WD40_repeat_dom.
[Graphical view]
PfamiPF12125. Beta-TrCP_D. 1 hit.
PF12937. F-box-like. 1 hit.
PF00400. WD40. 6 hits.
[Graphical view]
PRINTSiPR00320. GPROTEINBRPT.
SMARTiSM01028. Beta-TrCP_D. 1 hit.
SM00256. FBOX. 1 hit.
SM00320. WD40. 7 hits.
[Graphical view]
SUPFAMiSSF50978. SSF50978. 1 hit.
SSF81383. SSF81383. 1 hit.
PROSITEiPS50181. FBOX. 1 hit.
PS00678. WD_REPEATS_1. 6 hits.
PS50082. WD_REPEATS_2. 7 hits.
PS50294. WD_REPEATS_REGION. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Tissue: TestisImported.

Entry informationi

Entry nameiQ5U4E5_RAT
AccessioniPrimary (citable) accession number: Q5U4E5
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: May 11, 2016
This is version 103 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.