Q5U4E5 (Q5U4E5_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Beta-transducin repeat containing EMBL AAH85125.1

Submitted name:
Uncharacterized protein Ensembl ENSRNOP00000062209

Gene names

Name:

Btrc Ensembl ENSRNOP00000062209 RGD 1359721

Organism

Rattus norvegicus (Rat) EMBL AAH85125.1

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	506 AA.
Sequence status	Complete.
Protein existence	Evidence at transcript level

General annotation (Comments)

Sequence similarities

Contains 1 F-box domain. RuleBase RU004534

Ontologies

Keywords
Domain	Repeat RuleBase RU003532 WD repeat RuleBase RU000362
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

	Sequence		Length	Mass (Da)
	Q5U4E5 [UniParc]. Last modified December 7, 2004. Version 1. Checksum: F6289D4123070AAF	FASTA	506	58,123
	10 20 30 40 50 60 MKTENCVAKT KLANGTSSMI VPKQRKLSAS YEKEKELCVK YFEQWSESDQ VEFVEHLISQ 70 80 90 100 110 120 MCHYQHGHIN SYLKPMLQRD FITALPARGL DHIAENILSY LDARSLCAAE LVCKEWYRVT 130 140 150 160 170 180 SDGMLWKKLI ERMVRTDSLW RGLAERRGWG QYLFKNKPPD ENAPPNSFYR ALYPKIIQDI 190 200 210 220 230 240 ETIESNWRCG RHSLQRIHCR SETSKGVYCL QYDDQKIVSG LRDNTIKIWD KSTLECKRIL 250 260 270 280 290 300 TGHTGSVLCL QYDERVIITG SSDSTVRVWD VNAGEMLNTL IHHCEAVLHL RFNNGMMVTC 310 320 330 340 350 360 SKDRSIAVWD MASPTDITLR RVLVGHRAAV NVVDFDDKYI VSASGDRTIK VWNTSTCEFV 370 380 390 400 410 420 RTLNGHKRGI ACLQYRDRLV VSGSSDNTIR LWDIECGACL RVLEGHEELV RCIRFDNKRI 430 440 450 460 470 480 VSGAYDGKIK VWDLMAALDP RAPAGTLCLR TLVEHSGRVF RLQFDEFQIV SSSHDDTILI 490 500 WDFLNDPATH AEPPRSPSRT YTYISR

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)." The MGC Project Team Genome Res. 14:2121-2127(2004) [PubMed: 15489334] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA]. Tissue: Testis EMBL AAH85125.1.
[2]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed: 15057822] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000062209.
[3]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000062209.
+	Additional computationally mapped references.

Cross-references

Sequence databases
EMBL GenBank DDBJ	BC085125 mRNA. Translation: AAH85125.1.
IPI	IPI00951294.
RefSeq	NP_001007149.2. NM_001007148.2.
UniGene	Rn.21800.
3D structure databases
ProteinModelPortal	Q5U4E5.
SMR	Q5U4E5. Positions 28-482.
ModBase	Search...
Protein-protein interaction databases
STRING	Q5U4E5.
PTM databases
PhosphoSite	Q5U4E5.
Proteomic databases
PRIDE	Q5U4E5.
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000064259; ENSRNOP00000062209; ENSRNOG00000016280.
GeneID	361765.
KEGG	rno:361765.
UCSC	NM_001007148. rat.
Organism-specific databases
CTD	8945.
RGD	1359721. Btrc.
Phylogenomic databases
eggNOG	roNOG07921.
GeneTree	ENSGT00550000074285.
HOVERGEN	HBG002521.
InParanoid	Q5U4E5.
OrthoDB	EOG4F1X2M.
PhylomeDB	Q5U4E5.
Gene expression databases
ArrayExpress	Q5U4E5.
Genevestigator	Q5U4E5.
Family and domain databases
InterPro	IPR021977. Beta-TrCP_D. IPR001810. F-box_dom_cyclin-like. IPR022364. F-box_dom_Skp2-like. IPR020472. G-protein_beta_WD-40_rep. IPR015943. WD40/YVTN_repeat-like_dom. IPR001680. WD40_repeat. IPR011046. WD40_repeat-like_dom. IPR019775. WD40_repeat_CS. IPR017986. WD40_repeat_dom. [Graphical view]
Gene3D	G3DSA:2.130.10.10. WD40/YVTN_repeat-like. 1 hit.
KO	K03362.
Pfam	PF12125. Beta-TrCP_D. 1 hit. PF00400. WD40. 7 hits. [Graphical view]
PRINTS	PR00320. GPROTEINBRPT.
SMART	SM01028. Beta-TrCP_D. 1 hit. SM00256. FBOX. 1 hit. SM00320. WD40. 7 hits. [Graphical view]
SUPFAM	SSF81383. F-box_dom_Skp2-like. 1 hit. SSF50978. WD40_like. 1 hit.
PROSITE	PS50181. FBOX. 1 hit. PS00678. WD_REPEATS_1. 6 hits. PS50082. WD_REPEATS_2. 7 hits. PS50294. WD_REPEATS_REGION. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	677539.

Entry information

Entry name

Q5U4E5_RAT

Accession

Primary (citable) accession number: Q5U4E5

Entry history

Integrated into UniProtKB/TrEMBL:	December 7, 2004
Last sequence update:	December 7, 2004
Last modified:	January 25, 2012
This is version 64 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)