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Protein
Submitted name:

Protein Zfp78

Gene

Zfp78

Organism
Mus musculus (Mouse)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW
  2. nucleic acid binding Source: InterPro

GO - Biological processi

  1. regulation of transcription, DNA-templated Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-binding, Zinc

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Zfp78Imported
Submitted name:
Zinc finger protein 78Imported
Gene namesi
Name:Zfp78Imported
OrganismiMus musculus (Mouse)Imported
Taxonomic identifieri10090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
ProteomesiUP000000589 Componenti: Chromosome 7

Organism-specific databases

MGIiMGI:107783. Zfp78.

Subcellular locationi

GO - Cellular componenti

  1. nucleus Source: MGI
Complete GO annotation...

Expressioni

Gene expression databases

GenevestigatoriQ5U406.

Family & Domainsi

Keywords - Domaini

RepeatSAAS annotation, Zinc-fingerSAAS annotation

Phylogenomic databases

GeneTreeiENSGT00780000121862.
HOVERGENiHBG018163.
KOiK09228.
OMAiTTHTHEK.
TreeFamiTF337055.

Family and domain databases

Gene3Di3.30.160.60. 11 hits.
InterProiIPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01352. KRAB. 1 hit.
[Graphical view]
SMARTiSM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 11 hits.
[Graphical view]
SUPFAMiSSF109640. SSF109640. 1 hit.
PROSITEiPS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 11 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

Q5U406-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVELMKAML QEAVTFNDVA IDFSPEEWDW LNPAQRSLYR TVVLENYRNL
60 70 80 90 100
VSVGACISKP SLISLLEHGK EPWEVKGQVT GSRVQGGKSV QKTHELSLRQ
110 120 130 140 150
LVFEDVAVEN TTSLGCESLT SGRKQKCKDL LDRQMSQEIF NLKETVTHKG
160 170 180 190 200
THTKEIGYKH TESLKSAHLD SVEENIYTHK SNKKSFSKNP KVWKYKKIWA
210 220 230 240 250
GKTIFKCNEC EKTFTHSSAV TVHQRIHTGE KPYQCTVCGK AFKQSHHLAQ
260 270 280 290 300
HHTTHTHEKL FQCEECKKAF SQNSYLTVHR RIHTGEKPYK CKECAKSFRQ
310 320 330 340 350
PAHLAQHHRI HTGEKPYKCE ICGKAFNHSM SLTGHQRVHS GEKPYKCKDC
360 370 380 390 400
GKAFRQSIHL VVHSRIHTGE EPYECNECGK TFRESSQLTI HQRNHTGEKP
410 420 430 440 450
FECKQCGKFF NRSAYLARHQ KIHTGEKPYE CNECGKTFTH AAYLIRHKRV
460 470 480 490 500
HTGEKPYKCA ECGKAFGDGS SRAQHQRLHT GQRPYVCEKC GRAFRRKSSL
510
NCHQRYHTGK KL
Length:512
Mass (Da):58,921
Last modified:December 7, 2004 - v1
Checksum:iBA0200A8DA492D78
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC188607 Genomic DNA. No translation available.
BC085322 mRNA. Translation: AAH85322.1.
RefSeqiNP_001020334.1. NM_001025163.1.
UniGeneiMm.136456.

Genome annotation databases

EnsembliENSMUST00000108559; ENSMUSP00000104199; ENSMUSG00000055150.
GeneIDi330463.
KEGGimmu:330463.
UCSCiuc009fbf.1. mouse.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC188607 Genomic DNA. No translation available.
BC085322 mRNA. Translation: AAH85322.1.
RefSeqiNP_001020334.1. NM_001025163.1.
UniGeneiMm.136456.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSMUST00000108559; ENSMUSP00000104199; ENSMUSG00000055150.
GeneIDi330463.
KEGGimmu:330463.
UCSCiuc009fbf.1. mouse.

Organism-specific databases

CTDi330463.
MGIiMGI:107783. Zfp78.

Phylogenomic databases

GeneTreeiENSGT00780000121862.
HOVERGENiHBG018163.
KOiK09228.
OMAiTTHTHEK.
TreeFamiTF337055.

Miscellaneous databases

NextBioi399385.
PROiQ5U406.
SOURCEiSearch...

Gene expression databases

GenevestigatoriQ5U406.

Family and domain databases

Gene3Di3.30.160.60. 11 hits.
InterProiIPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamiPF01352. KRAB. 1 hit.
[Graphical view]
SMARTiSM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 11 hits.
[Graphical view]
SUPFAMiSSF109640. SSF109640. 1 hit.
PROSITEiPS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 11 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
    The MGC Project Team
    Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
    , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
    Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
    Strain: C3H/He miceImported.
    Tissue: OsteoblastImported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: C57BL/6JImported.
  3. Ensembl
    Submitted (FEB-2012) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: C57BL/6JImported.

Entry informationi

Entry nameiQ5U406_MOUSE
AccessioniPrimary (citable) accession number: Q5U406
Entry historyi
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: April 29, 2015
This is version 100 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.