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Q5U406 (Q5U406_MOUSE) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 93. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Zinc finger protein 78 EMBL AAH85322.1
Gene names
Name:Zfp78 EMBL AAH85322.1 MGI 107783 Ensembl ENSMUSP00000104199
OrganismMus musculus (Mouse) [Reference proteome] EMBL AAH85322.1
Taxonomic identifier10090 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus

Protein attributes

Sequence length512 AA.
Sequence statusComplete.
Protein existenceEvidence at transcript level

Sequences

Sequence LengthMass (Da)Tools
Q5U406 [UniParc].

Last modified December 7, 2004. Version 1.
Checksum: BA0200A8DA492D78

FASTA51258,921
        10         20         30         40         50         60 
MTVELMKAML QEAVTFNDVA IDFSPEEWDW LNPAQRSLYR TVVLENYRNL VSVGACISKP 

        70         80         90        100        110        120 
SLISLLEHGK EPWEVKGQVT GSRVQGGKSV QKTHELSLRQ LVFEDVAVEN TTSLGCESLT 

       130        140        150        160        170        180 
SGRKQKCKDL LDRQMSQEIF NLKETVTHKG THTKEIGYKH TESLKSAHLD SVEENIYTHK 

       190        200        210        220        230        240 
SNKKSFSKNP KVWKYKKIWA GKTIFKCNEC EKTFTHSSAV TVHQRIHTGE KPYQCTVCGK 

       250        260        270        280        290        300 
AFKQSHHLAQ HHTTHTHEKL FQCEECKKAF SQNSYLTVHR RIHTGEKPYK CKECAKSFRQ 

       310        320        330        340        350        360 
PAHLAQHHRI HTGEKPYKCE ICGKAFNHSM SLTGHQRVHS GEKPYKCKDC GKAFRQSIHL 

       370        380        390        400        410        420 
VVHSRIHTGE EPYECNECGK TFRESSQLTI HQRNHTGEKP FECKQCGKFF NRSAYLARHQ 

       430        440        450        460        470        480 
KIHTGEKPYE CNECGKTFTH AAYLIRHKRV HTGEKPYKCA ECGKAFGDGS SRAQHQRLHT 

       490        500        510 
GQRPYVCEKC GRAFRRKSSL NCHQRYHTGK KL 

« Hide

References

« Hide 'large scale' references
[1]"The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
The MGC Project Team
Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M. expand/collapse author list , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
Strain: C3H/He mice EMBL AAH85322.1.
Tissue: Osteoblast EMBL AAH85322.1.
[2]"Lineage-specific biology revealed by a finished genome assembly of the mouse."
Church D.M., Goodstadt L., Hillier L.W., Zody M.C., Goldstein S., She X., Bult C.J., Agarwala R., Cherry J.L., DiCuccio M., Hlavina W., Kapustin Y., Meric P., Maglott D., Birtle Z., Marques A.C., Graves T., Zhou S. expand/collapse author list , Teague B., Potamousis K., Churas C., Place M., Herschleb J., Runnheim R., Forrest D., Amos-Landgraf J., Schwartz D.C., Cheng Z., Lindblad-Toh K., Eichler E.E., Ponting C.P.
PLoS Biol. 7:E1000112-E1000112(2009) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: C57BL/6J Ensembl ENSMUSP00000104199.
[3]Ensembl
Submitted (FEB-2012) to UniProtKB
Cited for: IDENTIFICATION.
Strain: C57BL/6J Ensembl ENSMUSP00000104199.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AC188607 Genomic DNA. No translation available.
BC085322 mRNA. Translation: AAH85322.1.
RefSeqNP_001020334.1. NM_001025163.1.
UniGeneMm.136456.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSMUST00000108559; ENSMUSP00000104199; ENSMUSG00000055150.
GeneID330463.
KEGGmmu:330463.
UCSCuc009fbf.1. mouse.

Organism-specific databases

CTD330463.
MGIMGI:107783. Zfp78.

Phylogenomic databases

GeneTreeENSGT00750000117366.
HOVERGENHBG018163.
InParanoidQ5U406.
KOK09228.
OMATTHTHEK.
TreeFamTF337055.

Gene expression databases

GenevestigatorQ5U406.

Family and domain databases

Gene3D3.30.160.60. 11 hits.
InterProIPR001909. Krueppel-associated_box.
IPR007087. Znf_C2H2.
IPR015880. Znf_C2H2-like.
IPR013087. Znf_C2H2/integrase_DNA-bd.
[Graphical view]
PfamPF01352. KRAB. 1 hit.
[Graphical view]
SMARTSM00349. KRAB. 1 hit.
SM00355. ZnF_C2H2. 11 hits.
[Graphical view]
SUPFAMSSF109640. SSF109640. 1 hit.
PROSITEPS50805. KRAB. 1 hit.
PS00028. ZINC_FINGER_C2H2_1. 11 hits.
PS50157. ZINC_FINGER_C2H2_2. 11 hits.
[Graphical view]
ProtoNetSearch...

Other

NextBio399385.
PROQ5U406.
SOURCESearch...

Entry information

Entry nameQ5U406_MOUSE
AccessionPrimary (citable) accession number: Q5U406
Entry history
Integrated into UniProtKB/TrEMBL: December 7, 2004
Last sequence update: December 7, 2004
Last modified: May 14, 2014
This is version 93 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)