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Q5U406

- Q5U406_MOUSE

UniProt

Q5U406 - Q5U406_MOUSE

Protein
Submitted name:

Protein Zfp78

Gene

Zfp78

Organism
Mus musculus (Mouse)
Status
Unreviewed - Annotation score: 1 out of 5- Experimental evidence at transcript leveli
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    • History
      Entry version 94 (01 Oct 2014)
      Sequence version 1 (07 Dec 2004)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. nucleic acid binding Source: InterPro

    GO - Biological processi

    1. regulation of transcription, DNA-templated Source: InterPro

    Keywords - Ligandi

    Metal-binding, Zinc

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Zfp78Imported
    Submitted name:
    Zinc finger protein 78Imported
    Gene namesi
    Name:Zfp78Imported
    OrganismiMus musculus (Mouse)Imported
    Taxonomic identifieri10090 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeMusMus
    ProteomesiUP000000589: Chromosome 7

    Organism-specific databases

    MGIiMGI:107783. Zfp78.

    Subcellular locationi

    GO - Cellular componenti

    1. intracellular Source: InterPro

    Expressioni

    Gene expression databases

    GenevestigatoriQ5U406.

    Family & Domainsi

    Keywords - Domaini

    RepeatSAAS annotation, Zinc-fingerSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00750000117366.
    HOVERGENiHBG018163.
    InParanoidiQ5U406.
    KOiK09228.
    OMAiTTHTHEK.
    TreeFamiTF337055.

    Family and domain databases

    Gene3Di3.30.160.60. 11 hits.
    InterProiIPR001909. Krueppel-associated_box.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view]
    PfamiPF01352. KRAB. 1 hit.
    [Graphical view]
    SMARTiSM00349. KRAB. 1 hit.
    SM00355. ZnF_C2H2. 11 hits.
    [Graphical view]
    SUPFAMiSSF109640. SSF109640. 1 hit.
    PROSITEiPS50805. KRAB. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 11 hits.
    PS50157. ZINC_FINGER_C2H2_2. 11 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    Q5U406-1 [UniParc]FASTAAdd to Basket

    « Hide

    MTVELMKAML QEAVTFNDVA IDFSPEEWDW LNPAQRSLYR TVVLENYRNL    50
    VSVGACISKP SLISLLEHGK EPWEVKGQVT GSRVQGGKSV QKTHELSLRQ 100
    LVFEDVAVEN TTSLGCESLT SGRKQKCKDL LDRQMSQEIF NLKETVTHKG 150
    THTKEIGYKH TESLKSAHLD SVEENIYTHK SNKKSFSKNP KVWKYKKIWA 200
    GKTIFKCNEC EKTFTHSSAV TVHQRIHTGE KPYQCTVCGK AFKQSHHLAQ 250
    HHTTHTHEKL FQCEECKKAF SQNSYLTVHR RIHTGEKPYK CKECAKSFRQ 300
    PAHLAQHHRI HTGEKPYKCE ICGKAFNHSM SLTGHQRVHS GEKPYKCKDC 350
    GKAFRQSIHL VVHSRIHTGE EPYECNECGK TFRESSQLTI HQRNHTGEKP 400
    FECKQCGKFF NRSAYLARHQ KIHTGEKPYE CNECGKTFTH AAYLIRHKRV 450
    HTGEKPYKCA ECGKAFGDGS SRAQHQRLHT GQRPYVCEKC GRAFRRKSSL 500
    NCHQRYHTGK KL 512
    Length:512
    Mass (Da):58,921
    Last modified:December 7, 2004 - v1
    Checksum:iBA0200A8DA492D78
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC188607 Genomic DNA. No translation available.
    BC085322 mRNA. Translation: AAH85322.1.
    RefSeqiNP_001020334.1. NM_001025163.1.
    UniGeneiMm.136456.

    Genome annotation databases

    EnsembliENSMUST00000108559; ENSMUSP00000104199; ENSMUSG00000055150.
    GeneIDi330463.
    KEGGimmu:330463.
    UCSCiuc009fbf.1. mouse.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AC188607 Genomic DNA. No translation available.
    BC085322 mRNA. Translation: AAH85322.1 .
    RefSeqi NP_001020334.1. NM_001025163.1.
    UniGenei Mm.136456.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSMUST00000108559 ; ENSMUSP00000104199 ; ENSMUSG00000055150 .
    GeneIDi 330463.
    KEGGi mmu:330463.
    UCSCi uc009fbf.1. mouse.

    Organism-specific databases

    CTDi 330463.
    MGIi MGI:107783. Zfp78.

    Phylogenomic databases

    GeneTreei ENSGT00750000117366.
    HOVERGENi HBG018163.
    InParanoidi Q5U406.
    KOi K09228.
    OMAi TTHTHEK.
    TreeFami TF337055.

    Miscellaneous databases

    NextBioi 399385.
    PROi Q5U406.
    SOURCEi Search...

    Gene expression databases

    Genevestigatori Q5U406.

    Family and domain databases

    Gene3Di 3.30.160.60. 11 hits.
    InterProi IPR001909. Krueppel-associated_box.
    IPR007087. Znf_C2H2.
    IPR015880. Znf_C2H2-like.
    IPR013087. Znf_C2H2/integrase_DNA-bd.
    [Graphical view ]
    Pfami PF01352. KRAB. 1 hit.
    [Graphical view ]
    SMARTi SM00349. KRAB. 1 hit.
    SM00355. ZnF_C2H2. 11 hits.
    [Graphical view ]
    SUPFAMi SSF109640. SSF109640. 1 hit.
    PROSITEi PS50805. KRAB. 1 hit.
    PS00028. ZINC_FINGER_C2H2_1. 11 hits.
    PS50157. ZINC_FINGER_C2H2_2. 11 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)."
      The MGC Project Team
      Gerhard D.S., Wagner L., Feingold E.A., Shenmen C.M., Grouse L.H., Schuler G., Klein S.L., Old S., Rasooly R., Good P., Guyer M., Peck A.M., Derge J.G., Lipman D., Collins F.S., Jang W., Sherry S., Feolo M.
      , Misquitta L., Lee E., Rotmistrovsky K., Greenhut S.F., Schaefer C.F., Buetow K., Bonner T.I., Haussler D., Kent J., Kiekhaus M., Furey T., Brent M., Prange C., Schreiber K., Shapiro N., Bhat N.K., Hopkins R.F., Hsie F., Driscoll T., Soares M.B., Casavant T.L., Scheetz T.E., Brown-stein M.J., Usdin T.B., Toshiyuki S., Carninci P., Piao Y., Dudekula D.B., Ko M.S., Kawakami K., Suzuki Y., Sugano S., Gruber C.E., Smith M.R., Simmons B., Moore T., Waterman R., Johnson S.L., Ruan Y., Wei C.L., Mathavan S., Gunaratne P.H., Wu J., Garcia A.M., Hulyk S.W., Fuh E., Yuan Y., Sneed A., Kowis C., Hodgson A., Muzny D.M., McPherson J., Gibbs R.A., Fahey J., Helton E., Ketteman M., Madan A., Rodrigues S., Sanchez A., Whiting M., Madari A., Young A.C., Wetherby K.D., Granite S.J., Kwong P.N., Brinkley C.P., Pearson R.L., Bouffard G.G., Blakesly R.W., Green E.D., Dickson M.C., Rodriguez A.C., Grimwood J., Schmutz J., Myers R.M., Butterfield Y.S., Griffith M., Griffith O.L., Krzywinski M.I., Liao N., Morin R., Morrin R., Palmquist D., Petrescu A.S., Skalska U., Smailus D.E., Stott J.M., Schnerch A., Schein J.E., Jones S.J., Holt R.A., Baross A., Marra M.A., Clifton S., Makowski K.A., Bosak S., Malek J.
      Genome Res. 14:2121-2127(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA].
      Strain: C3H/He miceImported.
      Tissue: OsteoblastImported.
    2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: C57BL/6JImported.
    3. Ensembl
      Submitted (FEB-2012) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: C57BL/6JImported.

    Entry informationi

    Entry nameiQ5U406_MOUSE
    AccessioniPrimary (citable) accession number: Q5U406
    Entry historyi
    Integrated into UniProtKB/TrEMBL: December 7, 2004
    Last sequence update: December 7, 2004
    Last modified: October 1, 2014
    This is version 94 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3